View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8975_low_38 (Length: 226)
Name: NF8975_low_38
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8975_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 56 - 204
Target Start/End: Original strand, 559428 - 559576
Alignment:
| Q |
56 |
cacatcagaaaaagaagataaaaaagaattcacacaacattgattcaaatttttctctcttgaaatcaacatcatatttttcatatacacaattgagata |
155 |
Q |
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| T |
559428 |
cacatcagaaaaagaagataaaaaagaattcacacaacattgattcaaatttttctctcttgaaatcaacatcatatttttcatatacacaattgagata |
559527 |
T |
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| Q |
156 |
atcttaaatcttttccttttctctcgaataagttgtcaaacatagagtg |
204 |
Q |
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| T |
559528 |
atcttaaatcttttctttttctcttgaataagttgtcaaacatagagtg |
559576 |
T |
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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 204
Target Start/End: Original strand, 557743 - 557891
Alignment:
| Q |
56 |
cacatcagaaaaagaagataaaaaagaattcacacaacat--tgattcaaattttt--ctctcttgaaatcaa-catcatatttttcatatacacaattg |
150 |
Q |
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|||||||||||| || |||||||| | || ||||||||| |||||||||||||| ||||||||||||| | ||| |||||||||||||||||||||| |
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| T |
557743 |
cacatcagaaaa-gaggataaaaagaagttaacacaacatattgattcaaatttttatctctcttgaaatctagcataatatttttcatatacacaattg |
557841 |
T |
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| Q |
151 |
agataatcttaaatcttttccttttctctcgaataagttgtcaaacatagagtg |
204 |
Q |
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| T |
557842 |
agacaatcttaaatctt----ttttctctcgaataatttgtcaaacataaagtg |
557891 |
T |
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