View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8975_low_4 (Length: 527)

Name: NF8975_low_4
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8975_low_4
NF8975_low_4
[»] chr3 (4 HSPs)
chr3 (17-290)||(7966958-7967231)
chr3 (324-513)||(7966737-7966927)
chr3 (383-513)||(30935048-30935180)
chr3 (383-513)||(1652547-1652679)
[»] chr2 (3 HSPs)
chr2 (383-503)||(18681356-18681478)
chr2 (432-513)||(915110-915192)
chr2 (387-513)||(31902083-31902210)
[»] chr7 (2 HSPs)
chr7 (388-513)||(9349995-9350122)
chr7 (438-505)||(38485900-38485967)
[»] chr8 (2 HSPs)
chr8 (383-473)||(30235828-30235920)
chr8 (432-513)||(5214978-5215059)
[»] chr5 (2 HSPs)
chr5 (432-513)||(31721999-31722080)
chr5 (383-513)||(36979200-36979322)
[»] chr1 (1 HSPs)
chr1 (432-495)||(2987812-2987875)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 7967231 - 7966958
Alignment:
Q  17 agtaacaagggactaaaatggtgatgttgtggaagaaactggacttgatcttaagtcataataattttcaaaatatgtggtgtacgctatttggttgaga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7967231 agtaacaagggactaaaatggtgatgttgtggaagaaactggacttgatcttaagtcataataattttcaaaatatgtggtgtacgctatttgggtgaga 7967132  T
Q  117 tcagttggattagctagatatggtagagcatagctagctgcgctgtagatgagggaccaatttacttaggttcttaaaagcatcactcaaattatagaaa 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7967131 tcagttggattaactagatatggtagagcatagctagctgcgctgtagatgagggaccaatttacttaggttcttaaaagcatcactcaaattatagaaa 7967032  T
Q  217 atttggaccacatgctgatggcagtaagatttttgcacagcacaagttgaacatttttgtcacaaataactttg 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7967031 atttggaccacatgctgatggcagtaagatttttgcacagcacaagttgaacatttttgtcacaaataactttg 7966958  T

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Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 324 - 513
Target Start/End: Complemental strand, 7966927 - 7966737
Alignment:
Q  324 caatgaaaacatgtttctccactaagatgcatatgctaattgatcaaggtgttataataggggtgatgtttattttgatgggagttgtctttatggatgt 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7966927 caatgaaaacatgtttctccactaagatgcatatgctaattgatcaaggtgttataataggggtgatgtttattttgatgggagttgtctttatgggtgt 7966828  T
Q  424 ggattgc--aggtgtctttgtttgtgtttgttttcgggtgttccgcttatatgcgtcaccttaatttgtactttatgtaacaccgatctctg 513  Q
    |||| ||  ||||||||||||||||||||||||||||||||||||  ||||| || || ||||| ||||||||| |||||||| ||||||||    
T  7966827 ggatcgcaaaggtgtctttgtttgtgtttgttttcgggtgttccgtctatatacggcatcttaa-ttgtactttctgtaacacggatctctg 7966737  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 383 - 513
Target Start/End: Complemental strand, 30935180 - 30935048
Alignment:
Q  383 ggggtgatgtttattttgatgggagttgtctttatggatgtggattgcagg--tgtctttgtttgtgtttgttttcgggtgttccgcttatatgcgtcac 480  Q
    |||||||||||||||||| |||  ||||   ||| || ||| |||| ||||  |||||||||| ||||||||||||||||||| ||||||||| || |||    
T  30935180 ggggtgatgtttattttggtggatgttgctcttaagggtgttgattacagggttgtctttgttggtgtttgttttcgggtgtttcgcttatatacgacac 30935081  T
Q  481 cttaatttgtactttatgtaacaccgatctctg 513  Q
    |||| |||||| |||  |||| |||| ||||||    
T  30935080 cttagtttgtattttcagtaagaccggtctctg 30935048  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 513
Target Start/End: Complemental strand, 1652679 - 1652547
Alignment:
Q  383 ggggtgatgtttattttgatgggagttgtctttatggatgtggattgca--ggtgtctttgtttgtgtttgttttcgggtgttccgcttatatgcgtcac 480  Q
    |||||||||||||||||| |||| |||||| |||||  ||| ||| |||  |||||||||||  ||||||  ||||||||||||||| ||||| || | |    
T  1652679 ggggtgatgtttattttggtgggtgttgtccttatgagtgttgatcgcaagggtgtctttgtgggtgttt-atttcgggtgttccgcctatatacgacgc 1652581  T
Q  481 c-ttaatttgtactttatgtaacaccgatctctg 513  Q
    | ||| |||||||||| ||| ||| || ||||||    
T  1652580 ctttagtttgtactttctgtgacatcggtctctg 1652547  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 383 - 503
Target Start/End: Original strand, 18681356 - 18681478
Alignment:
Q  383 ggggtgatgtttattttgatgggagttgtctttatggatgtggattgcag--gtgtctttgtttgtgtttgttttcgggtgttccgcttatatgcgtcac 480  Q
    |||||||||||||||||   ||| |||||  |||||| ||| ||||||||  || |||||||| || |||||||||||||||||||| ||||| || |||    
T  18681356 ggggtgatgtttattttagagggtgttgttcttatgggtgttgattgcagaggtttctttgttagtatttgttttcgggtgttccgcctatatacgacac 18681455  T
Q  481 cttaatttgtactttatgtaaca 503  Q
    |||| |||||||||| |||||||    
T  18681456 cttagtttgtactttctgtaaca 18681478  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 513
Target Start/End: Complemental strand, 915192 - 915110
Alignment:
Q  432 ggtgtctttgtttgtgtttgttttcgggtgttccgcttatatgc-gtcaccttaatttgtactttatgtaacaccgatctctg 513  Q
    |||||||||||| |||||||||||||||||||||   ||||||| ||  | ||||| || ||||| |||||||||||||||||    
T  915192 ggtgtctttgttagtgtttgttttcgggtgttccaactatatgcggtgtctttaatgtgcactttttgtaacaccgatctctg 915110  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 513
Target Start/End: Complemental strand, 31902210 - 31902083
Alignment:
Q  387 tgatgtttattttgatgggagttgtctttatggatgtggattgcagg--tgtctttgtttgtgtttgttttcgggtgttccgcttatatgcgtcacctta 484  Q
    |||||||||||||||| | ||||||| |||| | ||| ||| |||||  || ||| ||| ||||| ||||||||||||||  | ||||| || | | ||     
T  31902210 tgatgtttattttgatag-agttgtccttattggtgttgatcgcagggttgccttggttggtgttagttttcgggtgttctacctatatacggcgctttg 31902112  T
Q  485 atttgtactttatgtaacaccgatctctg 513  Q
    ||||||||||| |||||||||| ||||||    
T  31902111 atttgtactttctgtaacaccggtctctg 31902083  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 513
Target Start/End: Original strand, 9349995 - 9350122
Alignment:
Q  388 gatgtttattttgatgggagttgtctttatggatgtggattgcagg--tgtctttgtttgtgtttgttttcgggtgttccgcttatatgcgtcaccttaa 485  Q
    ||||||||||||| |||| |||||| ||||||  || |||||||||  |||||||||| ||| || ||| | |||||||||| ||||| || | ||||      
T  9349995 gatgtttattttggtgggtgttgtccttatgggggttgattgcaggggtgtctttgttggtgattttttccaggtgttccgcctatatacggcgccttgg 9350094  T
Q  486 tttgtactttatgtaacaccgatctctg 513  Q
    |||||||||| |||||||||||||||||    
T  9350095 tttgtactttttgtaacaccgatctctg 9350122  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 505
Target Start/End: Original strand, 38485900 - 38485967
Alignment:
Q  438 tttgtttgtgtttgttttcgggtgttccgcttatatgcgtcaccttaatttgtactttatgtaacacc 505  Q
    |||||| ||||||||||||||||||||||| ||| | || | ||||| ||| |||||| |||||||||    
T  38485900 tttgttggtgtttgttttcgggtgttccgcctatttacgacgccttagtttatactttctgtaacacc 38485967  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 383 - 473
Target Start/End: Complemental strand, 30235920 - 30235828
Alignment:
Q  383 ggggtgatgtttattttgatgggagttgtctttatggatgtggattgca--ggtgtctttgtttgtgtttgttttcgggtgttccgcttatat 473  Q
    |||||||||||||||||| |||| |||||| || ||| ||| ||| |||  |||||||||||| |||||||||||||| |||||||| |||||    
T  30235920 ggggtgatgtttattttggtgggtgttgtccttttgggtgttgatcgcaagggtgtctttgttggtgtttgttttcggatgttccgcctatat 30235828  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 513
Target Start/End: Complemental strand, 5215059 - 5214978
Alignment:
Q  432 ggtgtctttgtttgtgtttgttttcgggtgttccgcttatatgcgtcaccttaatttgtactttatgtaacaccgatctctg 513  Q
    |||||||||||| | ||||||||||||||||| ||| ||||| || | ||||| |||||||||| ||||||| || ||||||    
T  5215059 ggtgtctttgttagagtttgttttcgggtgtttcgcctatatacggcgccttagtttgtactttctgtaacatcggtctctg 5214978  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 513
Target Start/End: Original strand, 31721999 - 31722080
Alignment:
Q  432 ggtgtctttgtttgtgtttgttttcgggtgttccgcttatatgcgtcaccttaatttgtactttatgtaacaccgatctctg 513  Q
    |||| ||||||| ||||||||||||||||||||||  ||||| || | ||||| |||||||||| ||||||| || ||||||    
T  31721999 ggtgcctttgttagtgtttgttttcgggtgttccgtctatatacggcgccttagtttgtactttctgtaacatcggtctctg 31722080  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 513
Target Start/End: Original strand, 36979200 - 36979322
Alignment:
Q  383 ggggtgatgtttattttgatgggagttgtctttatggatgtggattgcaggtgtctttgtttgtgtttgttttcgggtgttccgcttatatgcgtcacct 482  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||  |||| |        ||||||||||| |||| ||||||| ||||| || |||||    
T  36979200 ggggggatgtttattttgatgggagttgtccttatggatgttgatcacaggag--------tgtgtttgtttccgggcgttccgcatatatacgacacct 36979291  T
Q  483 taatttgtactttatgtaacaccgatctctg 513  Q
    || ||| || ||| | |||||||| ||||||    
T  36979292 tagtttatattttctttaacaccggtctctg 36979322  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 495
Target Start/End: Complemental strand, 2987875 - 2987812
Alignment:
Q  432 ggtgtctttgtttgtgtttgttttcgggtgttccgcttatatgcgtcaccttaatttgtacttt 495  Q
    ||||| |||||| |||||||||||||| |||||||| ||||| || | ||||| ||||||||||    
T  2987875 ggtgtttttgttggtgtttgttttcggatgttccgcctatatacggcgccttagtttgtacttt 2987812  T

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