View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8975_low_42 (Length: 205)
Name: NF8975_low_42
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8975_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 16410086 - 16410260
Alignment:
| Q |
13 |
cagagattttgagcttgtccttgtagtaatcatccttcaagtctttgtaatatctactctcgtagtattcataatcagaatcatgagtatgttttgattt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16410086 |
cagagattttgagcttgtccttgtagtaatcatccttcaagtcttcgtaatatctactctcgtagtattcataatcagaatcatgagtatgttttgattt |
16410185 |
T |
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| Q |
113 |
tctgtacatctaaacacaagaatcataaaatcaactccaaagaaattgctacgcaaatagctagctacatagagt |
187 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16410186 |
tctgtacatctaaaaacaagaatcataaaatcaactccaaagaaattgctacacaaatagctagctacatagagt |
16410260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 41475639 - 41475513
Alignment:
| Q |
13 |
cagagattttgagcttgtccttgtagtaatcatccttcaagtctttgtaatatctactctcgtagtattcataatcagaatcatgagtatgttttgattt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
41475639 |
cagagattttgagcttgtccttgtagtaatcatccttcaagtcttcataatatctactctcgtagtattcataatccgaatcatgagtatgttttgatct |
41475540 |
T |
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| Q |
113 |
tctgtacatctaaacacaagaatcata |
139 |
Q |
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| T |
41475539 |
tttggacatctgaaaataagaatcata |
41475513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 40749898 - 40749729
Alignment:
| Q |
13 |
cagagattttgagcttgtccttgtagtaatcatccttcaagtctttgtaatatctactctcgtagtattcataatcagaatcatgagtatgttttgattt |
112 |
Q |
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|||| ||| ||||||||||||||||||||||||| ||||| |||||||||||||| | || |||||| || ||||||| |||||||| |||| |||||| |
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| T |
40749898 |
cagatattatgagcttgtccttgtagtaatcatctttcaaatctttgtaatatctgcgcttgtagtactccaaatcagattcatgagtctgttctgattt |
40749799 |
T |
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| Q |
113 |
tctgtacatctaaacacaagaatcataaaatcaactccaaagaaattgctacgcaaatagctagctacata |
183 |
Q |
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|| |||||||| || | | ||||||||||| || ||||||||| |||||| ||||||||| |||||||| |
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| T |
40749798 |
tcggtacatctgaaaatgaaaatcataaaattaattccaaagaagttgctaaacaaatagct-gctacata |
40749729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 41482693 - 41482560
Alignment:
| Q |
13 |
cagagattttgagcttgtccttgtagtaatcatccttcaagtctttgtaatatctactctcgtagtattcataatcagaatcatgagtatgttttgattt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || |||||| || |||| || ||| ||| |||| |||||| |
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| T |
41482693 |
cagagattttgagcttgtccttgtagtaatcatccttcaggtctttaaaatatctacgcttgtagtactccaaatctgattcacgagcctgttctgattt |
41482594 |
T |
|
| Q |
113 |
tctgtacatctaaacacaagaatcataaaatcaa |
146 |
Q |
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| ||||||||| || | | |||||||||||||| |
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| T |
41482593 |
tttgtacatctgaaaatgaaaatcataaaatcaa |
41482560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 31634526 - 31634477
Alignment:
| Q |
33 |
ttgtagtaatcatccttcaagtctttgtaatatctactctcgtagtattc |
82 |
Q |
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|||||||||||||||||||| | | |||||||||||| ||| |||||||| |
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| T |
31634526 |
ttgtagtaatcatccttcaattttgtgtaatatctacgctcatagtattc |
31634477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 33054085 - 33054170
Alignment:
| Q |
35 |
gtagtaatcatccttcaagtctttgtaatatctactctcgtagtatt-cataatcagaatcatgagtatgttttgattttctgtac |
119 |
Q |
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| T |
33054085 |
gtagtaatcatccttcaacttgttgtaatatttacgctcatagtattccaaaattagattcacgagtatgttctgattttcggtac |
33054170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 24442712 - 24442799
Alignment:
| Q |
32 |
cttgtagtaatcatccttcaagtctttgtaatatctactctcgtagtattcataatcagaatcatgagtatgttttgattttctgtac |
119 |
Q |
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||||||||||||||||||||| ||||||||||||| ||| |||||||| ||||||| ||||| |||| || |||||||| |||| |
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| T |
24442712 |
cttgtagtaatcatccttcaacatgttgtaatatctacgctcatagtattccaaatcagattcatgggtatattctgattttcggtac |
24442799 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 5646713 - 5646800
Alignment:
| Q |
32 |
cttgtagtaatcatccttcaagtctttgtaatatctactctcgtagtattcataatcagaatcatgagtatgttttgattttctgtac |
119 |
Q |
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|
||||||||||||||||||||| | |||||||||||||| || ||||| || ||||||| | | ||||||||| ||||||||||| |
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| T |
5646713 |
cttgtagtaatcatccttcaattttttgtaatatctacattcatagtactccaaatcagatttacaggtatgttttaattttctgtac |
5646800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 24840610 - 24840521
Alignment:
| Q |
32 |
cttgtagtaatcatccttcaagtctttgtaatatctactctcgtag--tattcataatcagaatcatgagtatgttttgattttctgtac |
119 |
Q |
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|||||||||||||||||||| | |||||||||| ||| ||| ||| ||||| ||||||| ||| | ||||||| ||||||||||||| |
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| T |
24840610 |
cttgtagtaatcatccttcagttttttgtaatatttacgctcatagtatattctaaatcagattcacgggtatgttctgattttctgtac |
24840521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 23988020 - 23987931
Alignment:
| Q |
32 |
cttgtagtaatcatccttcaagtctttgtaatatctactctcgtagtattcataatcagaatcatgagtatgttttgattttctgtacat |
121 |
Q |
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|
||||||||||||||||||||| | ||||||||| ||| ||| |||||||| |||||| |||| |||| || |||||||| |||||| |
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| T |
23988020 |
cttgtagtaatcatccttcaacttgttgtaatatatacactcatagtattccagatcagattcataggtatattctgattttcggtacat |
23987931 |
T |
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