View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8975_low_6 (Length: 507)
Name: NF8975_low_6
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8975_low_6 |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: scaffold0044 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Complemental strand, 92149 - 91719
Alignment:
| Q |
19 |
gaacccacaaactaaaatggtgggacaactttcaatgattagaattcgtccacaagcatactcaaaagtcagaaaccgtatcagaatagaaacgtgaaac |
118 |
Q |
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| T |
92149 |
gaacccacaaactaaaatggtgggacaactttcaatgattagaattcgtccacaagcatattcaaaagtcataaaccgtatcagaatagaaacgtgaaac |
92050 |
T |
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| Q |
119 |
aagaaatgacaactcgcgagatatgaagaaggaccattagcaagcgagttttgaagaaccaaacacaagcatatcccaaatcatgagataccacaatcgg |
218 |
Q |
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| T |
92049 |
aagaaatgacaactcgcgagatatgaagaaggaccattagcaagcgagttttgaagaaccaaacacaagcacaacccaaatcatgagataccacaatcgg |
91950 |
T |
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| Q |
219 |
aaagatgaaatgaccgagtagttgccggagatttacagaccttttcgagtta----tgcgaccacggttaatgcttcatggttgtgcaatggtgatatta |
314 |
Q |
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| T |
91949 |
aaagatgaaatgaccgagtaggtgccggagatttacagaccttttcgagttatgcgtgcgaccacggttaatgcttcatggttgtgcaatggtgatatta |
91850 |
T |
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| Q |
315 |
gtacaaccattttcggaaaatttcttggggaaagaaaatatataattggatatgtatctattttgttcatcataaccaactgaaatataacaaataagag |
414 |
Q |
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||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |
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| T |
91849 |
gtacaaccattttcggacaattttttggggaaggaaaatatataattggatatgtatctattttgttcatcataaccaactgaaatataacgaatgacag |
91750 |
T |
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| Q |
415 |
acgtatccagatatatcatttgaaacctgca |
445 |
Q |
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| T |
91749 |
acgtatccagatatattatttgaaacctgca |
91719 |
T |
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