View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8975_low_7 (Length: 503)
Name: NF8975_low_7
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8975_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 33590810 - 33591126
Alignment:
| Q |
1 |
agttttcatctttcttcaaattcaaattcaaagtattattattgtattggaattggaatttgagtattggttttggataatgattgtggaagttgggaat |
100 |
Q |
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| T |
33590810 |
agttttcatctttcttcaaattcaaattcaaagtattattattgtattggaattggaatttgagtattggttttggataatgattgtggaagttgggaat |
33590909 |
T |
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| Q |
101 |
ggaggtgttggtattggagaagaagggggagggaggtttagagggtttggaagtttgattaggaggaaacaagttgattctgttcattacaggggtcatc |
200 |
Q |
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| T |
33590910 |
gga---------------gaagaagggggagggaggtttagagggtttggaagtttgattaggaggaaacaagttgattctattcattacaggggtcatc |
33590994 |
T |
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| Q |
201 |
ctcaattggctaggaagttatctgttgttgatcttgttggaattggtaattcattcttaatttttcaatttcaatttataagaaagaagtgaaaaatttg |
300 |
Q |
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| T |
33590995 |
ctcaattggctaggaagttatctgttgttgatcttgttggaattggtaattcattcttaatttttcaatttcaatttataagaaagaagtgaaaaatttg |
33591094 |
T |
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| Q |
301 |
aatgattagtgattatgacttaatgaattgag |
332 |
Q |
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| T |
33591095 |
aataattagtgattatgacttaatgaattgag |
33591126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 404 - 487
Target Start/End: Original strand, 33591190 - 33591273
Alignment:
| Q |
404 |
gttggttaatgaagtgatttaacattagtctttatgttgattttgacttgatatggttttgctgtcagttaaaagagtgagaat |
487 |
Q |
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| T |
33591190 |
gttggttaatgaagtgatttaacattagtctttatgttgattttgacttgatatggttttgctgtcagttaaaagagtgagaat |
33591273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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