View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8975_low_8 (Length: 501)
Name: NF8975_low_8
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8975_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 45784251 - 45783774
Alignment:
| Q |
1 |
aaaaactttttactatgtttgatgttttgattnnnnnnnttatttgtcttttttcctcattttctatagacataaaagcatataagacataaaaa-taga |
99 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
45784251 |
aaaagctttttactatgtttgatgttttgattaaaaaaattatttgtcttttttcctcactttctatagacataaaagcatataagacataaaaaataga |
45784152 |
T |
|
| Q |
100 |
aaatttgcttaagaaaagtagtagtttatttcattaaaaagacgaaatcatttatttttgaatagatatactaagcagtactttttgttgaatttcaaca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45784151 |
aaatttgcttaagaaaagtagtagtttatttcattaaaaagacaaaatcatttatttttgaatagatatactaagcagtactttttgttgaatttcaaca |
45784052 |
T |
|
| Q |
200 |
caaatgttgtgagccgaaaaactcttgttaggtcactcatgaaaagaatcatatactcttccttcaatacagaaatgaactataaattgaggatattact |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45784051 |
caaatgttgtgagccgaaaaactcttgttaggtcactcatgaaaagaatcatatactcttc----aatacagaaatgaactataaattgaggatattact |
45783956 |
T |
|
| Q |
300 |
tatcatattatatcacaacaagaaaaatcatggcaggaccagtatcaatgaggtgtcaagttgcattggttcttgtattggttgtggcattggggaccaa |
399 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45783955 |
tatcatattatatcacaa---gaaaaatcatggcaggaccagtatcaatgaggtgtcaagttgcattggttcttgtattggttgtggcattggggaccaa |
45783859 |
T |
|
| Q |
400 |
aatggaaatgggtgaggcacaaactacttgtccaactcagcttagcaatctgaatgtttgtgcaccatttgttgttcctggttca |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45783858 |
aatggaaatgggtgaggcacaaactacttgtccaactcagcttagcaatctgaatgtttgtgcaccatttgttgttcctggttca |
45783774 |
T |
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