View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8976_low_1 (Length: 800)
Name: NF8976_low_1
Description: NF8976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8976_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 636; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 10 - 778
Target Start/End: Original strand, 51114426 - 51115204
Alignment:
| Q |
10 |
gtttggtgttaatattattctagtacaaatttaattcttgattatctctttcnnnnnnnagatatctgagaaaatattctgctaattattcatgtccatt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51114426 |
gtttggtgttaatattattctagtacaaatttaattcttgattatctctttctttttttagatatctgagaaaatattctgcaaattattcatgtccatt |
51114525 |
T |
|
| Q |
110 |
ggtgtttgaaccttatttatgtgttggattagaagttagatagaatgcatgcttgaaatgt----------agttcatttcacacggcaaataaggtaca |
199 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
51114526 |
ggtgtttgaaccttatttatttgttggattagaagttagatagaatgcatgcttgaaatgtgtatgtctgtagttcatttcacacggcaaataagataca |
51114625 |
T |
|
| Q |
200 |
aaacaaaatgaaacctacattaaaatgtgacatcggagtgtgttcttctcaagtctctggtttgatcctctt-agtgccaattttggtgtgttagtttga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51114626 |
aaacaaaatgaaacctacattaaaatgtgacatcggagtgtgttcttctcaagtctctagtttgatcctcttcagtgccaattttggtgtgttagtttga |
51114725 |
T |
|
| Q |
299 |
cttcttcttnnnnnnnntgtgaaactatcttaaaactaatcaacattcttctaattcctcgttgtgttgaaagttccatcgaaaattggcatctttctgc |
398 |
Q |
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| T |
51114726 |
cttcttcttaaaaaaaatgtgaaactatcttaaaactaatcaatattcttctaattcctcgtcgtgttgaaagttccatcgaaaattggcatctttctgc |
51114825 |
T |
|
| Q |
399 |
atacgcctgcatattatgtttcttattttgaaattatgctttgtctgatattggtttttgaagctattgacaaactactcattcttttctgcattgattc |
498 |
Q |
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| T |
51114826 |
atacgcctgcatattatgtttcttattttgaaattatgctttgtctgatattggtttttgaaactattgactgactactcattcttttctgcattgattc |
51114925 |
T |
|
| Q |
499 |
gagtgtttaattagttttaatatggtcaataacaaggtataatcaaaatctagtagcaaccttagatagtgttgaatgcacgttagttatcaaaaaggaa |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51114926 |
gagtgtttaattagttttaatatggtcaataacaaggtataatcaaaatctagtagcaaccttagatagtgttgaatgcacgttagttatcaaaaaggaa |
51115025 |
T |
|
| Q |
599 |
atcctgagtttggaaattaggtggttgttctctgtatcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagattttggtgtatatt |
698 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
51115026 |
atcctgagtttggaaattaggtggttgttctctgtttcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagatttaggtgtacatt |
51115125 |
T |
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| Q |
699 |
ttgttgtttctatttagtttttgatcaactttcgttgttgcttaatgattctgtttgtggtgacttgattattgaataca |
778 |
Q |
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| T |
51115126 |
ttgttgtttctatttagtttttgatcaactttcgttgttgcttaatgattctgtttgt-gtgacttgattattgaataca |
51115204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 368 - 451
Target Start/End: Original strand, 5768822 - 5768905
Alignment:
| Q |
368 |
aaagttccatcgaaaattggcatctttctgcatacgcctgcatattatgtttcttattttgaaattatgctttgtctgatattg |
451 |
Q |
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|||||||||| |||| ||||||||||||||| || | || ||||||||||||||||||||||| |||| |||||| |||||||| |
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| T |
5768822 |
aaagttccatggaaatttggcatctttctgcttatggctacatattatgtttcttattttgaagttatcctttgtttgatattg |
5768905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 620 - 693
Target Start/End: Original strand, 1119125 - 1119198
Alignment:
| Q |
620 |
tggttgttctctgtatcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagattttggtgt |
693 |
Q |
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|||||||||||||| ||| ||||||| ||||||| | |||||||||||||| ||||||||||||||||||||| |
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| T |
1119125 |
tggttgttctctgtttcagtatttcagttacaatgtacggcttacaaaactacgactcaggaagattttggtgt |
1119198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 360 - 504
Target Start/End: Original strand, 1118657 - 1118800
Alignment:
| Q |
360 |
ttgtgttgaaagttccatcgaaaattggcatctttctgcatacgcctgcatattatgtttcttattttgaaattatgctttgtctgatattggtttttga |
459 |
Q |
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||||||||| | |||||| |||||| |||||||||||| | || |||||||||||||||||| | ||||||||||||||||| |||| |||||||| |
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| T |
1118657 |
ttgtgttgataattccatggaaaatatgcatctttctgctgagacccacatattatgtttcttattcttaaattatgctttgtctggtatt-gtttttga |
1118755 |
T |
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| Q |
460 |
agctattgacaaactactcattcttttctgcattgattcgagtgt |
504 |
Q |
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|| ||||||| | |||| ||||| ||||| |||||| |||||| |
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| T |
1118756 |
agatattgactacgtactgtttcttctctgctttgatttgagtgt |
1118800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 552616 - 552568
Alignment:
| Q |
10 |
gtttggtgttaatattattctagtacaaatttaattcttgattatctctttc |
61 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
552616 |
gtttggtgttaatattattctg---caaatttaattcttgattgtctctttc |
552568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 656 - 710
Target Start/End: Complemental strand, 29020718 - 29020664
Alignment:
| Q |
656 |
atggcttacaaaactatgactcaggaagattttggtgtatattttgttgtttcta |
710 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||| || |||||| |||| |
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| T |
29020718 |
atggtttacagaactatgactcaggaagattttggtgtattttgtgttgtctcta |
29020664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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