View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8976_low_13 (Length: 378)
Name: NF8976_low_13
Description: NF8976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8976_low_13 |
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| [»] chr2 (12 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 378
Target Start/End: Complemental strand, 8412962 - 8412605
Alignment:
| Q |
21 |
ataaacactcttcaaataatattaattcatatatatcatgactttattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagagagta |
120 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8412962 |
ataaacacccttcaaataatattaattcatatatatcatggctttattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagaaagta |
8412863 |
T |
|
| Q |
121 |
attaatgcttcaatccatctcccaaagctcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaggaactaaaagtaatcaaac |
220 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8412862 |
attaatgcttcaatccatctcccaaaactcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaac |
8412763 |
T |
|
| Q |
221 |
agtacaaaaatactccattattagaaaacaacaacatcacacaaatattacaagatcaacaacaaaagcattgtacaatttctaatgctacagttcaact |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8412762 |
agtacaaaaatactccattattagaaaacaacaacatcacacaaatattacaagatcaacaacaaaagcattctacaatttctaatgctacagttcaact |
8412663 |
T |
|
| Q |
321 |
ctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaa |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8412662 |
ctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaa |
8412605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 378
Target Start/End: Complemental strand, 8435060 - 8434703
Alignment:
| Q |
21 |
ataaacactcttcaaataatattaattcatatatatcatgactttattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagagagta |
120 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8435060 |
ataaacacccttcaaataatattaattcatatatatcatggctttattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagaaagta |
8434961 |
T |
|
| Q |
121 |
attaatgcttcaatccatctcccaaagctcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaggaactaaaagtaatcaaac |
220 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8434960 |
attaatgcttcaatccatctcccaaaactcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaac |
8434861 |
T |
|
| Q |
221 |
agtacaaaaatactccattattagaaaacaacaacatcacacaaatattacaagatcaacaacaaaagcattgtacaatttctaatgctacagttcaact |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8434860 |
agtacaaaaatactccattattagaaaacaacaacatcacacaaatattacaagatcaacaacaaaagcattctacaatttctaatgctacagttcaact |
8434761 |
T |
|
| Q |
321 |
ctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaa |
378 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8434760 |
ctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaa |
8434703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 49 - 378
Target Start/End: Original strand, 8394515 - 8394844
Alignment:
| Q |
49 |
atatatatcatgactttattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagagagtaattaatgcttcaatccatctcccaaagc |
148 |
Q |
| |
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|||||||||||| ||| | ||||||||||||||| | |||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||| | |
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| T |
8394515 |
atatatatcatgtcttcaatacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaac |
8394614 |
T |
|
| Q |
149 |
tcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaggaactaaaagtaatcaaacagtacaaaaatactccattattagaaaa |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8394615 |
tcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactccattattagaaaa |
8394714 |
T |
|
| Q |
249 |
caacaacatcacacaaatattacaagatcaacaacaaaagcattgtacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagac |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8394715 |
caacaacatcacacaaatattacaagatcaacaacaaaagcattctacaaattctaatgctacagttcaactctatgcagtcttggaagctgtatcagac |
8394814 |
T |
|
| Q |
349 |
agaatagaaatgcatcacaacattggcgaa |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
8394815 |
agaatagaaatgcatcacaacattggcgaa |
8394844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 263 - 378
Target Start/End: Complemental strand, 8431743 - 8431630
Alignment:
| Q |
263 |
aaatattacaagatcaacaacaaaagcattgtacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgca |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| || ||| |||||||||| |||| || ||||||||||||||||||||||||||||| |
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| T |
8431743 |
aaatattacaagatcaacaacaaaagcattctacaaattctaaagccacaattcaactcta--cagttttagaagctgtatcagacagaatagaaatgca |
8431646 |
T |
|
| Q |
363 |
tcacaacattggcgaa |
378 |
Q |
| |
|
|||||||||||||||| |
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| T |
8431645 |
tcacaacattggcgaa |
8431630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 8431956 - 8431775
Alignment:
| Q |
29 |
tcttcaaataatattaattcatatatatcatgactt---tattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagagagtaattaa |
125 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| ||| |||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| |
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| T |
8431956 |
tcttcaaatattattaatttgtatatatcatggcttcaatattacaaacttcagttctaacttcttgttctttatcatc---ttcaaagagagtaattaa |
8431860 |
T |
|
| Q |
126 |
tgcttcaatccatctcccaaagctcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaggaactaaaa |
210 |
Q |
| |
|
|||| |||| |||| ||||| ||| |||||||||||||| ||| || ||||| ||||||||||||| |||||| ||| ||||| |
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|
| T |
8431859 |
tgctgcaattaatcttccaaaactcccaaatatttcattgccaactattcaaaccagaaaacaagttgttgatcaagaattaaaa |
8431775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 8395012 - 8395087
Alignment:
| Q |
303 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaa |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8395012 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaa |
8395087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 303 - 378
Target Start/End: Complemental strand, 8406560 - 8406485
Alignment:
| Q |
303 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaa |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8406560 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaa |
8406485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 210
Target Start/End: Complemental strand, 8406874 - 8406694
Alignment:
| Q |
30 |
cttcaaataatattaattcatatatatcatgactt---tattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagagagtaattaat |
126 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||| |||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| |
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| T |
8406874 |
cttcaaatattattaatttgtatatatcatggcttcaatattacaaacttcagttctaacttcttgttctttatcatc---ttcaaagagagtaattaac |
8406778 |
T |
|
| Q |
127 |
gcttcaatccatctcccaaagctcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaggaactaaaa |
210 |
Q |
| |
|
||| |||| |||| ||||| ||| |||||||||||||| ||| || ||||| ||||||||||||| |||||| ||| ||||| |
|
|
| T |
8406777 |
gctgcaattaatcttccaaaactcccaaatatttcattgccaactattcaaaccagaaaacaagttgttgatcaagaattaaaa |
8406694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 8368931 - 8368868
Alignment:
| Q |
315 |
tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaa |
378 |
Q |
| |
|
||||||||||||| | | ||| ||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
8368931 |
tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaa |
8368868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 8400479 - 8400542
Alignment:
| Q |
315 |
tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaa |
378 |
Q |
| |
|
||||||||||||| | | ||| ||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
8400479 |
tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaa |
8400542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 8422056 - 8422119
Alignment:
| Q |
315 |
tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaa |
378 |
Q |
| |
|
||||||||||||| | | ||| ||||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
8422056 |
tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaa |
8422119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 8417882 - 8417832
Alignment:
| Q |
322 |
tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacatt |
372 |
Q |
| |
|
|||||||||||||||| ||| || |||||||| |||||||||||||||||| |
|
|
| T |
8417882 |
tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacatt |
8417832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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