View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8976_low_15 (Length: 375)
Name: NF8976_low_15
Description: NF8976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8976_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 169 - 362
Target Start/End: Complemental strand, 28466381 - 28466188
Alignment:
| Q |
169 |
cattggttaatgatgatattaatatttcatgagcatgtgatgatgaaaccaacctggtttctgaaaccatggtttggatttggagctttgaattggtggc |
268 |
Q |
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| T |
28466381 |
cattggttaatgatgatattaatatttcatgagcatgtgatgataaaaccaacctggtttctgaaaccatggtttggatttggagctttgaatttgtggc |
28466282 |
T |
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| Q |
269 |
attgaagaagagaatggtttggtttaaggaggcaactagagagagccatgattgtaagaaggtgagaatgaatgaaattgtataagctgtttgt |
362 |
Q |
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| T |
28466281 |
attgaagaagagaatggtttggtttaaggaggcaactagagagagccatgattgtaagaaggtgagaatgaatgaaattgtataagctgtttgt |
28466188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 28474787 - 28474651
Alignment:
| Q |
181 |
atgatattaatatttcatgagcatgtgatgatgaaaccaacctggtttctgaaaccatggtttggatttggagctttgaattggtggcattgaagaagag |
280 |
Q |
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| T |
28474787 |
atgatattaatatttcatgtgcatgggatgaataaaccaacctggtttctgtaaccatggtttggatttggagctatgaatttgtggcattgaagaagag |
28474688 |
T |
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| Q |
281 |
aatggtttggtttaaggaggcaactagagagagccat |
317 |
Q |
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| T |
28474687 |
agtggtttggtttaaggaggcaactagagagagccat |
28474651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 28466559 - 28466483
Alignment:
| Q |
1 |
tcagcagagaaattgatcttccattcatctttttctttccttataatagtcctttccccatcactgcttgatgaagc |
77 |
Q |
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| T |
28466559 |
tcagcagagaaattgatcttccattcatctttttctttccttataatagtcctttccccatcactgcttgatgaagc |
28466483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 28474980 - 28474904
Alignment:
| Q |
1 |
tcagcagagaaattgatcttccattcatctttttctttccttataatagtcctttccccatcactgcttgatgaagc |
77 |
Q |
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| T |
28474980 |
tcagcagagaaattgatcttccattcatctttttctttccttataacagtcctctcctcatcactgtttgatgaagc |
28474904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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