View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8976_low_19 (Length: 326)

Name: NF8976_low_19
Description: NF8976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8976_low_19
NF8976_low_19
[»] chr1 (1 HSPs)
chr1 (19-316)||(32466639-32466935)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 32466935 - 32466639
Alignment:
Q  19 gaggtcacacacaaattagcattagtaactcccaatatttcaagggaccgttttttctgaaaagtttggttaactgaaccttttaaattttatggttcag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32466935 gaggtcacacacaaattagcattagtaactcccaatatttcaagggaccgttttttctgaaaagtttggttaactgaaccttttaaattt-atggttcag 32466837  T
Q  119 atcatgaaccattgaatatgatttgatctttaatgatccaaccaataacatgagatatatacttgaaatggggtgtgacatctaatgaccactgatgaaa 218  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32466836 atcatgaaccatttaatatgatttgatctttaatgatccaaccaataacatgagatatatacttgaaatggggtgtgacatctaatgaccactgatggaa 32466737  T
Q  219 ttattactaaattgatccacctttggcatctgatgactacttatggaattatgtagaattggacatttgcaagtcggattcgccatcctatcctatct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32466736 ttattactaaattgatccacctttggcatctgatgactacttatggaattatgtagaattggacatttgcaagtcggattcgccatcctatcctatct 32466639  T

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