View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8976_low_22 (Length: 282)

Name: NF8976_low_22
Description: NF8976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8976_low_22
NF8976_low_22
[»] chr3 (4 HSPs)
chr3 (32-127)||(21554053-21554148)
chr3 (32-86)||(8566439-8566493)
chr3 (68-126)||(20767264-20767323)
chr3 (32-69)||(22970867-22970904)
[»] chr7 (2 HSPs)
chr7 (46-125)||(8303680-8303760)
chr7 (32-86)||(1981546-1981600)
[»] chr5 (3 HSPs)
chr5 (39-127)||(19377313-19377401)
chr5 (46-98)||(41427380-41427433)
chr5 (88-127)||(22984867-22984906)
[»] scaffold0526 (1 HSPs)
scaffold0526 (31-86)||(7977-8032)
[»] chr1 (1 HSPs)
chr1 (32-117)||(8772926-8773012)
[»] chr2 (1 HSPs)
chr2 (39-86)||(41001995-41002042)
[»] chr6 (1 HSPs)
chr6 (32-77)||(27890373-27890418)
[»] chr4 (3 HSPs)
chr4 (37-86)||(8409426-8409475)
chr4 (50-87)||(55475829-55475866)
chr4 (89-127)||(8409491-8409529)
[»] chr8 (2 HSPs)
chr8 (1-35)||(44267069-44267103)
chr8 (39-84)||(40542034-40542080)
[»] scaffold0017 (1 HSPs)
scaffold0017 (37-77)||(128784-128824)
[»] scaffold0061 (2 HSPs)
scaffold0061 (46-76)||(1732-1762)
scaffold0061 (46-76)||(7243-7273)
[»] scaffold0182 (1 HSPs)
scaffold0182 (37-69)||(24446-24478)


Alignment Details
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 21554148 - 21554053
Alignment:
Q  32 aaaatgccaaaaaatttcattctttcacttcccccacacttcctcaatagttacatgttcatctagttgagaatgaactaaacctaactagattgc 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21554148 aaaatgccaaaaaatttcattctttcacttcccccacacttcctcaatagttacatgttcatctagttgagaatgaactaaacctaactagattgc 21554053  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 8566493 - 8566439
Alignment:
Q  32 aaaatgccaaaaaatttcattctttcacttcccccacacttcctcaatagttaca 86  Q
    |||| |||||||  |||||||||||||||||||||||||||||||||||||||||    
T  8566493 aaaaggccaaaatttttcattctttcacttcccccacacttcctcaatagttaca 8566439  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 20767323 - 20767264
Alignment:
Q  68 cacttcctcaatagttacatg-ttcatctagttgagaatgaactaaacctaactagattg 126  Q
    ||||||||||||||||||||| ||||||||||| | | ||||||| ||||||||||||||    
T  20767323 cacttcctcaatagttacatggttcatctagttcaaattgaactacacctaactagattg 20767264  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 22970867 - 22970904
Alignment:
Q  32 aaaatgccaaaaaatttcattctttcacttcccccaca 69  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  22970867 aaaaggccaaaaaaattcattctttcacttcccccaca 22970904  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 8303680 - 8303760
Alignment:
Q  46 tttcattctttcacttcccccacacttcctcaatagttacat-gttcatctagttgagaatgaactaaacctaactagatt 125  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| | |||||||||||  ||||||||||    
T  8303680 tttcattctttcacttcccccacacttcctcaatagttacatggttcttctggttcaaaatgaactaaatgtaactagatt 8303760  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 1981600 - 1981546
Alignment:
Q  32 aaaatgccaaaaaatttcattctttcacttcccccacacttcctcaatagttaca 86  Q
    |||| |||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  1981600 aaaaggccaaaattttttattctttcacttcccccacacttcctcaatagttaca 1981546  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 19377313 - 19377401
Alignment:
Q  39 caaaaaatttcattctttcacttcccccacacttcctcaatagttacatgttcatctagttgagaatgaactaaacctaactagattgc 127  Q
    ||||||||||||||||||||||||| ||| |||| |||| |||||||| ||||||||| || | |||||| |||||||||||| |||||    
T  19377313 caaaaaatttcattctttcacttcctccagacttactcattagttacacgttcatctaattcaaaatgaagtaaacctaactaaattgc 19377401  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 41427380 - 41427433
Alignment:
Q  46 tttcattctttcacttcccccacacttcctcaatagttaca-tgttcatctagt 98  Q
    |||||||||||||||||||||||||||||||  ||||||||  |||||||||||    
T  41427380 tttcattctttcacttcccccacacttcctcgttagttacacggttcatctagt 41427433  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 22984906 - 22984867
Alignment:
Q  88 gttcatctagttgagaatgaactaaacctaactagattgc 127  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  22984906 gttcatctagttgaaaatgaactaagcctaactagattgc 22984867  T

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Target: scaffold0526 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 7977 - 8032
Alignment:
Q  31 taaaatgccaaaaaatttcattctttcacttcccccacacttcctcaatagttaca 86  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7977 taaaaggccaaaaaatttcattcttttacttcccccacacttcctcaatagttaca 8032  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 8772926 - 8773012
Alignment:
Q  32 aaaatgccaaaaaatttcattctttcacttcccccacacttcctcaatagttaca-tgttcatctagttgagaatgaactaaaccta 117  Q
    |||| ||||||||  |||||||||||||||| | |||||||||| | |||||||| ||||||||||||| | |||||||||||||||    
T  8772926 aaaaggccaaaaatattcattctttcacttctcgcacacttccttattagttacattgttcatctagttcaaaatgaactaaaccta 8773012  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 41001995 - 41002042
Alignment:
Q  39 caaaaaatttcattctttcacttcccccacacttcctcaatagttaca 86  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  41001995 caaaaaaattcattctttcacttccccaacacttcctcaatagttaca 41002042  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 27890373 - 27890418
Alignment:
Q  32 aaaatgccaaaaaatttcattctttcacttcccccacacttcctca 77  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||    
T  27890373 aaaaggccaaaaactttcattctttcacttcccccacacttcctca 27890418  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 8409426 - 8409475
Alignment:
Q  37 gccaaaaaatttcattctttcacttcccccacacttcctcaatagttaca 86  Q
    ||||||||||||| |||||||||||||||| | |||||||||||||||||    
T  8409426 gccaaaaaatttccttctttcacttcccccgctcttcctcaatagttaca 8409475  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 55475829 - 55475866
Alignment:
Q  50 attctttcacttcccccacacttcctcaatagttacat 87  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55475829 attctttcacttcccccacacttcctcaatagttacat 55475866  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 8409491 - 8409529
Alignment:
Q  89 ttcatctagttgagaatgaactaaacctaactagattgc 127  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  8409491 ttcatctagttcaaaatgaactaaacctaactagattgc 8409529  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44267069 - 44267103
Alignment:
Q  1 cgagggatttcatggacactgtttactaaataaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  44267069 cgagggatttcatggacactgtttactaaataaaa 44267103  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 40542080 - 40542034
Alignment:
Q  39 caaaaaatttc-attctttcacttcccccacacttcctcaatagtta 84  Q
    ||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  40542080 caaaaaatttccattctttcacttcgcccacacttccacaatagtta 40542034  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 128824 - 128784
Alignment:
Q  37 gccaaaaaatttcattctttcacttcccccacacttcctca 77  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  128824 gccaaaaattttcattctttaacttcccccacacttcctca 128784  T

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Target: scaffold0061 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 76
Target Start/End: Complemental strand, 1762 - 1732
Alignment:
Q  46 tttcattctttcacttcccccacacttcctc 76  Q
    |||||||||||||||||||||||||||||||    
T  1762 tttcattctttcacttcccccacacttcctc 1732  T

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Target: scaffold0061; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 76
Target Start/End: Complemental strand, 7273 - 7243
Alignment:
Q  46 tttcattctttcacttcccccacacttcctc 76  Q
    |||||||||||||||||||||||||||||||    
T  7273 tttcattctttcacttcccccacacttcctc 7243  T

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Target: scaffold0182 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 24446 - 24478
Alignment:
Q  37 gccaaaaaatttcattctttcacttcccccaca 69  Q
    ||||||||||||||||| |||||||||||||||    
T  24446 gccaaaaaatttcattccttcacttcccccaca 24478  T

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