View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8976_low_3 (Length: 616)
Name: NF8976_low_3
Description: NF8976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8976_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 18 - 602
Target Start/End: Original strand, 11844201 - 11844785
Alignment:
| Q |
18 |
caattatttatcacgacttctaattcgattcaattttagtgtgcgatatacatgagttttaaactataacctaacttggttcttttgtttcagaaactga |
117 |
Q |
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| T |
11844201 |
caattatttatcaccacttctaattcgattcaattttagtttgcgatatacatgagttttaaactataagctaactcagttcttttgtttcagaaactga |
11844300 |
T |
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| Q |
118 |
agtattcaataataagaacaaccggtcaaagaagtcggctattgtaggtatgtataaatttaaaaagaaaaattaagaatatgaaaatttattttcttta |
217 |
Q |
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| T |
11844301 |
agtattcaataataagaacaaccgatcaaagaagtcggctattgtaggtatgtataaatttaaaaagaaaaattaagaatatgaaaatttattttcttta |
11844400 |
T |
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| Q |
218 |
atcgaacttgactgatacttacctagtgctttggccatgaatttccctctagctgatacttttattaagtaaaattgaatgcaaaacttaaaatatgtct |
317 |
Q |
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| T |
11844401 |
atcgaacttgactgatacttacctagtgctttggccatgaatttccctctagctgatacttttattaggtaaaattgaatgcaaaacttaaaatatgtct |
11844500 |
T |
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| Q |
318 |
aaaaaacacatactctttctatttgataaaacacgttaacgcctcataactcgcatgccataagtaccactcatatggtaaaatgttattgggatatttg |
417 |
Q |
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| T |
11844501 |
aaaaaacacatactctttctatttgataaaacacggtaaccactcataactcgcatgccataagtaccactcatatggtaaaatgttattgggatatttg |
11844600 |
T |
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| Q |
418 |
atatgctgacgtgcgggtctaaacccgcagttctccacttctccgtacttagtgtgagttttacaaataacagttctcaattacactcaccagtcaccac |
517 |
Q |
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| T |
11844601 |
atatgcagacgtgcgggtctaaacccacagttctccacttctccgtacttagggtgagttttgcaattaacagctctcaattacactcaccagtcaccac |
11844700 |
T |
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| Q |
518 |
tatgttttcataatctcctaatttattgtgacaaatgtgtaggggtttcatcaagtctcggatccataggtttcatgattggtct |
602 |
Q |
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| T |
11844701 |
tatgttttcataatctcctaatttactgtgacaaatgtgtaggggtttcatcaagtctcggatccataggtttcatggttggtct |
11844785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 240 - 602
Target Start/End: Original strand, 11849152 - 11849514
Alignment:
| Q |
240 |
ctagtgctttggccatgaatttccctctagctgatacttttattaagtaaaattgaatgcaaaacttaaaatatgtctaaaaaacacatactctttctat |
339 |
Q |
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| T |
11849152 |
ctagtgctttggccatgaatttccatctagctgatacttttattaggtaaaattgaatgcaaaatttaaaatatgtctaaaaaacacatactctttctat |
11849251 |
T |
|
| Q |
340 |
ttgataaaacacgttaacgcctcataactcgcatgccataagtaccactcatatggtaaaatgttattgggatatttgatatgctgacgtgcgggtctaa |
439 |
Q |
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| T |
11849252 |
ttgataaaacacgttaacacctcatgattcgcatcccataagtaccactcatatggtaaaatgttattgggatatttgatatgcagacgtgcgggtctaa |
11849351 |
T |
|
| Q |
440 |
acccgcagttctccacttctccgtacttagtgtgagttttacaaataacagttctcaattacactcaccagtcaccactatgttttcataatctcctaat |
539 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849352 |
acccacagttctccacttctccgtacttagtgtgagttttgcaattaacagctctcaattacactcaccagtcaccactatgttttcataatctcctaat |
11849451 |
T |
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| Q |
540 |
ttattgtgacaaatgtgtaggggtttcatcaagtctcggatccataggtttcatgattggtct |
602 |
Q |
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| T |
11849452 |
ttattgtgacaaatgtgtaggggtttcatcaagtctcggatccataggtttcatgattggtct |
11849514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 11848970 - 11849140
Alignment:
| Q |
18 |
caattatttatcacgacttctaattcgattcaattttagtgtgcgatatacatgagttttaaactataacctaacttggttcttttgtttcagaaactga |
117 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||| | || | ||||||||||||||||| ||||| |||||| ||||||||||||||||||| ||| |
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| T |
11848970 |
caattatttatcacaacttctaattc-----aattttactttgggttatacatgagttttaaagtataagctaactcggttcttttgtttcagaaagtga |
11849064 |
T |
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| Q |
118 |
agtattcaataataagaacaaccggtcaaagaagtcggctattgtaggtatgtataaatttaaaaagaaaaattaa |
193 |
Q |
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| T |
11849065 |
agtattcaataataagaacaaccggtcaaagaagtcggctattgtaggtatgtataaatttaaaaagaaaaattaa |
11849140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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