View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8976_low_9 (Length: 550)
Name: NF8976_low_9
Description: NF8976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8976_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 4e-98; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 8 - 265
Target Start/End: Original strand, 31617470 - 31617727
Alignment:
| Q |
8 |
tttggtgtttatagaccgtgagtttaaatatttttgattcatgatttggtgttttatgtttatggtgttacataaacaccactactaggaatagattggc |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||||||||| ||||| || || || |
|
|
| T |
31617470 |
tttggtgtttatagactgtgagtttaaatattttcgatacatgatttggtgttttatgtttatgatgttacagaaacaccactatcaggaacaggtttgc |
31617569 |
T |
|
| Q |
108 |
atcgcatgctgccacagtttcaaaaatctgagtttcacagtttttatgcagattagctttcagttcgggtagcggtaaatcaaatgatacatttacaatt |
207 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31617570 |
atcgcatgctgccactgtttcaaaaatctgagtttcacagtttttatgcagattatctttgagttcgggtagcgttaaatcaaatgatacatttacaatt |
31617669 |
T |
|
| Q |
208 |
gattccttctgtgtgaaataaattagaagttgggaaaatcatcataagtgaaagttta |
265 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
31617670 |
gattccttctgtgtaaactaaattagaagctgggaaaagcatcataagtgcaagttta |
31617727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 345 - 550
Target Start/End: Original strand, 31617801 - 31618006
Alignment:
| Q |
345 |
gccagtttggtgccagtaaatttgccgctacgatcactataatttgtgcaaaatggattttgaagttcaacaaactaataccatattggtatgccagaaa |
444 |
Q |
| |
|
|||||||| ||| ||||||||| | | ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31617801 |
gccagtttagtgacagtaaattagtcactacgataactataattcgtgcaaaatggattttgaagttcaacaaactaataccatatttgtatgccagaaa |
31617900 |
T |
|
| Q |
445 |
tagttacacaaattaattagtccatttaatttatagaaataacaactattttgatactgtaactgaatttgtctcgtacaaatcagatgacgacatatct |
544 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
31617901 |
tagttacacaaattaattagtccattgaatttatagaaataacaattattttgatactgtaactgaatttgtctcgtacaaatcggatgaagacatatct |
31618000 |
T |
|
| Q |
545 |
gacact |
550 |
Q |
| |
|
|||||| |
|
|
| T |
31618001 |
gacact |
31618006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 106 - 340
Target Start/End: Original strand, 31607555 - 31607788
Alignment:
| Q |
106 |
gcatcgcatgctgccacagtttcaaaaatctgagtttcacagttt-ttatgcagattagctttcagttcgggtagcggtaaatcaaatgatacatttaca |
204 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||| | || ||||||| | |||| ||||| | |||| ||||||||| |||||||||||| |
|
|
| T |
31607555 |
gcatcgcaggctgccactgtttcaaaaatctgagtttcacagtgtgttttgcagatcatctttgagttcaagaagcgttaaatcaaaagatacatttaca |
31607654 |
T |
|
| Q |
205 |
attgattccttctgtgtgaaataaattagaagttgggaaaatcatcataagtgaaagtttaaatgctcctgaaacactatcataagt-gcaagtatagac |
303 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| ||||| ||||||||||| ||| || ||||||| |||||||||||||||||| | |||| ||| |
|
|
| T |
31607655 |
attgattccttctgtatgagataaattagaagt---gaaaagcatcataagtgcaagcttcaatgctcatgaaacactatcataagtggaaagtttagga |
31607751 |
T |
|
| Q |
304 |
aagtatggtgcatgacttgaattcacaacagaaataa |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31607752 |
aagtatggtgcatgacttgaattcacaacagaaataa |
31607788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 372 - 550
Target Start/End: Original strand, 31604224 - 31604402
Alignment:
| Q |
372 |
ctacgatcactataatttgtgcaaaatggattttgaagttcaacaaactaataccatattggtatgccagaaatagttacacaaattaattagtccattt |
471 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||| |||||||||||| |||| ||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31604224 |
ctacgatccctataatttgtacaaaatggactttcaagttcaacaaattaattccatatttgtatgccagaaatagttacacaagttaattagtccattt |
31604323 |
T |
|
| Q |
472 |
aatttatagaaataacaactattttgatactgtaactgaatttgtctcgtacaaatcagatgacgacatatctgacact |
550 |
Q |
| |
|
|||||| |||| ||||| ||||||||| |||| | ||| ||||||| |||| ||||||||| ||||| ||||||||| |
|
|
| T |
31604324 |
gatttattgaaagaacaattattttgattctgttattgatattgtctcatacagatcagatgaagacatgtctgacact |
31604402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 259 - 340
Target Start/End: Original strand, 31604080 - 31604161
Alignment:
| Q |
259 |
aagtttaaatgctcctgaaacactatcataagtgcaagtatagacaagtatggtgcatgacttgaattcacaacagaaataa |
340 |
Q |
| |
|
|||||| ||||||| ||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31604080 |
aagtttcaatgctcatgaaacactatcacaagtgcatgtttagacaagtatggtgcatgacttgaattcacaacagaaataa |
31604161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 283 - 340
Target Start/End: Original strand, 31617710 - 31617767
Alignment:
| Q |
283 |
atcataagtgcaagtatagacaagtatggtgcatgacttgaattcacaacagaaataa |
340 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31617710 |
atcataagtgcaagtttagacaagtatggtgcatgacttgaattcacaacagaaataa |
31617767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 53 - 342
Target Start/End: Original strand, 31613781 - 31614075
Alignment:
| Q |
53 |
ttggtgttttatgtttatggtgttacataaacaccactactaggaatagattggcatcgcatgctgccacagtttcaaaaatctgagtttcacagttttt |
152 |
Q |
| |
|
||||||||| ||||||| ||||||| | ||||| ||||| |||| || || |||||||| ||| |||| ||||||||||||||||||||| | |||| |
|
|
| T |
31613781 |
ttggtgtttgatgtttacggtgttatagaaacatcactatcgggaacaggtttgcatcgcaagctaccac-gtttcaaaaatctgagtttcata--tttt |
31613877 |
T |
|
| Q |
153 |
atgcagattagctttcagttcgggtagcggtaaatcaaatgatacatttacaattgattccttctgtgtgaaataaattagaagttgggaaa---atcat |
249 |
Q |
| |
|
|||| |||| |||| | ||| | | | || ||||||||||||| |||||| |||||| ||||| ||||||| ||||||| ||||||| ||||| |
|
|
| T |
31613878 |
ctgcaaattatctttaaattcagaaactgttagatcaaatgatacacttacaacagattccatctgtatgaaatagattagaatctgggaaaagcatcat |
31613977 |
T |
|
| Q |
250 |
cataagtgaaagtttaaatgctcctgaaacactatcataagtgcaag-----tatagacaagtatggtgcatgacttgaattcacaacagaaataaat |
342 |
Q |
| |
|
|||||| |||||||| ||||||| ||||| || |||||| | ||| | ||||| |||||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
31613978 |
cataagggaaagttttaatgctcatgaaatacagtcataaaggaaagtttaatttagactagtatggtgcatgactagaattcaaaacagaaaaaaat |
31614075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 452 - 548
Target Start/End: Original strand, 31607895 - 31607991
Alignment:
| Q |
452 |
acaaattaattagtccatttaatttatagaaataacaactattttgatactgtaactgaatttgtctcgtacaaatcagatgacgacatatctgaca |
548 |
Q |
| |
|
||||||||||| ||||||| ||||||||| | |||| |||||||| |||||||||||||||||||| || ||||||||||| ||||||| ||||| |
|
|
| T |
31607895 |
acaaattaattgatccatttgatttatagatagaacagttattttgacactgtaactgaatttgtctcatataaatcagatgaagacatatatgaca |
31607991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 452 - 550
Target Start/End: Original strand, 31614180 - 31614277
Alignment:
| Q |
452 |
acaaattaattagtccatttaatttatagaaataacaactattttgatactgtaactgaatttgtctcgtacaaatcagatgacgacatatctgacact |
550 |
Q |
| |
|
|||||||||| | ||| ||| ||| ||||||| ||||| |||||||||||||||| ||||||||||||||||||||| ||||| || |||||| ||||| |
|
|
| T |
31614180 |
acaaattaataaatcctttttattcatagaaa-aacaattattttgatactgtaattgaatttgtctcgtacaaatcggatgaagaaatatctaacact |
31614277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 31607499 - 31607549
Alignment:
| Q |
29 |
gtttaaatatttttgattcatgatttggtgttttatgtttatggtgttaca |
79 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
31607499 |
gtttaaatattttccatacatgatttggtgttttatgtttatggtgttaca |
31607549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 31607857 - 31607904
Alignment:
| Q |
377 |
atcactataatttgtgcaaaa-tggattttgaagttcaacaaactaat |
423 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
31607857 |
atcactataatttgtacaaaaatggattttgaagttcaacaaattaat |
31607904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 31603884 - 31603945
Alignment:
| Q |
8 |
tttggtgtttatagaccgtgagtttaaatatttttgattcatgatttggtgttttatgttta |
69 |
Q |
| |
|
||||||||||| ||| |||| ||| ||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
31603884 |
tttggtgtttagagagcgtgggttcaaatattttccatgcatgatttggtgttttaagttta |
31603945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 52175303 - 52175241
Alignment:
| Q |
203 |
caattgattccttctgtgtgaaataaattagaag-ttgggaaaatcatcataagtgaaagttt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||| |||| |||||| |||||| |
|
|
| T |
52175303 |
caattgattccttctgtgtgaaataaattagaagcttggaaaaagcatcttaagtgcaagttt |
52175241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University