View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8977_low_1 (Length: 1549)
Name: NF8977_low_1
Description: NF8977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8977_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 1400; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1400; E-Value: 0
Query Start/End: Original strand, 18 - 1529
Target Start/End: Complemental strand, 14175815 - 14174305
Alignment:
| Q |
18 |
acatcagaatacaccatatccaatttattatctttcagctttgaagttctgctgaaagaaactctatgttgcttgccaaacaaacagtaatcacaaggat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14175815 |
acatcagaatacaccatatccaatttattatctttcagctttgaagttctgctgaaagaaactctatgttgcttgccaaacaaacaataatcacaaggat |
14175716 |
T |
|
| Q |
118 |
tcaacttagtacctttgtcagacggaatgagggacttccttgacaaaatttgcaatcctttttcacttagatgagccagcgttttatgccacaaatctgg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
14175715 |
tcaacttagtacctttgtcagacggaatgagggacttccttgacaaaatttgcaatcctttttcacttaaatgagccagccttttatgccacaaatctgg |
14175616 |
T |
|
| Q |
218 |
caaagtaacattctcgaccgcattcaagccatctttgatcagcttgacttgagttttgtaaagcgttgaatacacggcgcctctagcaatcatcaacgat |
317 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
14175615 |
caaagcaacattctcgaccgcattcaagccatctttgatcagcttgacttgagttttgtaaagcgtcgaatacacgacgcctctagcaatcatcaacgat |
14175516 |
T |
|
| Q |
318 |
cctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatggacagagattagatttagacgcaaatctggcacat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175515 |
cctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatggacagagattagatttagacgcaaatctggcacat |
14175416 |
T |
|
| Q |
418 |
gtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttac |
517 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175415 |
gtcgcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttac |
14175316 |
T |
|
| Q |
518 |
tttgccaaagtctcctactttatacatcgtaaagaattctttgttggaagtagcatgataagaagctgctgagtcaatgacccattcaacacatgaatct |
617 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175315 |
tttgccaaagtctcctactttgtacattgtaaagaattctttattggaagtagcgtgataagaagctgctgagtcaatgacccattcaacacatgaatct |
14175216 |
T |
|
| Q |
618 |
gcaacatgacattcttcttcttcaactgaaagcaacaccacttccccatcaactactggggttgtggtattttcatcttcgtctggtctttgattcctcc |
717 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175215 |
gcaacatgacattcttcttcttcaacagaaagcaacaccacttccccatcaactactggggttgtggtattttcatcttcgtctggtctttgattcctcc |
14175116 |
T |
|
| Q |
718 |
ggtccttcttttctttgttcttccaagatttgcaatttcttttgatgtgaccttcttcgccgcagtgaaagcacttgaactttcttcgaggttgagattg |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14175115 |
ggtccttcttttctttgttcttccaagatttgcaatttcttttgatgtgaccttcttcgccgcagtgaaaacacttgaactttcttcgaggttgagattg |
14175016 |
T |
|
| Q |
818 |
tgatctgtctttggatttattggatctccccccgctcttgcttctgcctctgttctccgtgacaagggcctgagagctacttgatcccatgtcttttctt |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175015 |
tgatctgtctttggatttattggatctccccccgctcttgcttctgcctctgttctccgtgacaagggcctgagagctacttgatcccatgtcttttctt |
14174916 |
T |
|
| Q |
918 |
cttgtttcttcattgaacatactatcttttacctgggacaaagtgagtgctccatctggagcagagttgcttaatgacaccaccaaagtttcccaacttt |
1017 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14174915 |
cttgtttcttcattgaacatactatcttttacctgggacaaagtgagcgctccatctggagcagagttgcttaatgacaccaccaaagtctcccaacttt |
14174816 |
T |
|
| Q |
1018 |
ccggcaaagaactcaaaagtaacagtgcttgtaattcgtcatccagcaccagcttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtg |
1117 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174815 |
ctggcaaagaactcaaaagtaatagtgcttgtaattcatcatccagcaccaacttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtg |
14174716 |
T |
|
| Q |
1118 |
ctcggcaactgatcttccctcccgatactttaaattcaccaactttctaatagcgaaagttttgttttgtgcggtctttctttgatacatcttttcgatg |
1217 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174715 |
ctcggcaactgatcttccctctcggtactttagattcaccaactttct-atagcgaaagttttgttttgtgcggtctttctttgatacatcttttcgatg |
14174617 |
T |
|
| Q |
1218 |
ttcttccacagagtctgggcatttgtctctgtggccacatggtggaatacactaagatccacccactgcctaatcagactgacagccttccgatgagact |
1317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14174616 |
ttcttccacagagtctgggcatttgtctctgtggccacatggtggaatacactaagatccacccactgcctaatcagactgacaaccttccgatgagact |
14174517 |
T |
|
| Q |
1318 |
ttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggctt |
1417 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174516 |
ttttccagtcttcatccgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggctt |
14174417 |
T |
|
| Q |
1418 |
ccaaatggagtagtttgtagaagtgagtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctccaaccgga |
1517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14174416 |
ccaaatggagtagtttgtagaagtgagtttaatcatcgtaccagtgttaccagttttctcctccatttaatttacactatactctcaagctccaaccgga |
14174317 |
T |
|
| Q |
1518 |
gctctgatacca |
1529 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14174316 |
gctctgatacca |
14174305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 1349; E-Value: 0
Query Start/End: Original strand, 18 - 1529
Target Start/End: Original strand, 28610063 - 28611565
Alignment:
| Q |
18 |
acatcagaatacaccatatccaatttattatctttcagctttgaagttctgctgaaagaaactctatgttgcttgccaaacaaacagtaatcacaaggat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28610063 |
acatcagaatacaccatatccaatttattacctttcagctttgaagttctgctgaaagaaactctatgttgcttgccaaacaaacaataatcacaaggat |
28610162 |
T |
|
| Q |
118 |
tcaacttagtacctttgtcagacggaatgagggacttccttgacaaaatttgcaatcctttttcacttagatgagccagcgttttatgccacaaatctgg |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
28610163 |
tcaacttagtacctttgccagacggaatgagggacttccttgacaaaatttgcaatcctttttcacttaaatgagccagccttttatgccacaaatctgg |
28610262 |
T |
|
| Q |
218 |
caaagtaacattctcgaccgcattcaagccatctttgatcagcttgacttgagttttgtaaagcgttgaatacacggcgcctctagcaatcatcaacgat |
317 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28610263 |
caaagcaacattctcgaccgcattcaagccatctttgatcagcttgacttgagttttgtaaagcgtcgaatacacggcgcctctagcaatcatcaacgat |
28610362 |
T |
|
| Q |
318 |
cctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatggacagagattagatttagacgcaaatctggcacat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610363 |
cctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatggacagagattagatttagacgcaaatctggcacat |
28610462 |
T |
|
| Q |
418 |
gtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttac |
517 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610463 |
gtcgcacgtccttcagtgttagtgtaaaatcggtattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttac |
28610562 |
T |
|
| Q |
518 |
tttgccaaagtctcctactttatacatcgtaaagaattctttgttggaagtagcatgataagaagctgctgagtcaatgacccattcaacacatgaatct |
617 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28610563 |
tttgccaaagtctcctactttgtacatcgtaaagaattctttattggaagtagcgtgataagaagctgctgagtcaatgacccattaaacacatgaatct |
28610662 |
T |
|
| Q |
618 |
gcaacatgacattcttcttcttcaactgaaagcaacaccacttccccatcaactactggggttgtggtattttcatcttcgtctggtctttgattcctcc |
717 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610663 |
gcaagatgacattcttcttcttcaacagaaagcaacaccacttccccatcaactactggggttgtggtattttcatcttcgtctggtctttgattcctcc |
28610762 |
T |
|
| Q |
718 |
ggtccttcttttctttgttcttccaagatttgcaatttcttttgatgtgaccttcttcgccgcagtgaaagcacttgaactttcttcgaggttgagattg |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28610763 |
ggtccttcttttctttgttcttccaagatttgcaatttcttttgatgtgaccttcttcgccgcagtgaaaacacttgaactttcttcgaggttgagattg |
28610862 |
T |
|
| Q |
818 |
tgatctgtctttggatttattggatctccccccgctcttgcttctgcctctgttctccgtgacaagggcctgagagctacttgatcccatgtcttttctt |
917 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610863 |
tgatctgtc-ttggatttattggatctccccccgctcttgcttctgcctctgttctccgtgacaagggcctgagagctacttgatcccatgtcttttctt |
28610961 |
T |
|
| Q |
918 |
cttgtttcttcattgaacatactatcttttacctgggacaaagtgagtgctccatctggagcagagttgcttaatgacaccaccaaagtttcccaacttt |
1017 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28610962 |
cttgtttcttcattgaacatactatcttttacctgggacaaagtgagcgctccatctggagcagagttgcttaatgacaccaccaaagtctcccaacttt |
28611061 |
T |
|
| Q |
1018 |
ccggcaaagaactcaaaagtaacagtgcttgtaattcgtcatccagcaccagcttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtg |
1117 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611062 |
ctggcaaagaactcaaaagtaatagtgcttgtaattcatcatccagcaccaacttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtg |
28611161 |
T |
|
| Q |
1118 |
ctcggcaactgatcttccctcccgatactttaaattcaccaactttctaatagcgaaagttttgttttgtgcggtctttctttgatacatcttttcgatg |
1217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28611162 |
ctcggcaactgatcttccctcccgatactttagattcaccaactttctaatagcgaaagttttgttttgtgcgttctttctttgatacatcttttcgatg |
28611261 |
T |
|
| Q |
1218 |
ttcttccacagagtctgggcatttgtctctgtggccacatggtggaatacactaagatccacccactgcctaatcagactgacagccttccgatgagact |
1317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28611262 |
ttcttccacagagtctgggcatttgtctctgtggccacatggtggaatacactaagatccacccactgcctaatcagactaacagccttccgatgagact |
28611361 |
T |
|
| Q |
1318 |
ttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctcca-tttttggct |
1416 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28611362 |
ttttccagtcttcatccgtaaccttatctggctttgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccattttttggct |
28611461 |
T |
|
| Q |
1417 |
tccaaatggagtagtttgtagaagtgagtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctccaaccgg |
1516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28611462 |
tccaaatggagtagtttgtagaagtgagtttaatcatcg---------taccagtgttctcctccatttaatttacactatactctcgagctccaatcgg |
28611552 |
T |
|
| Q |
1517 |
agctctgatacca |
1529 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28611553 |
agctctgatacca |
28611565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 1352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 1352; E-Value: 0
Query Start/End: Original strand, 18 - 1529
Target Start/End: Complemental strand, 12932545 - 12931043
Alignment:
| Q |
18 |
acatcagaatacaccatatccaatttattatctttcagctttgaagttctgctgaaagaaactctatgttgcttgccaaacaaacagtaatcacaaggat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12932545 |
acatcagaatacaccatatccaatttattatctttcagctttgaagttctgctgaaagaaactctatgttgcttgccaaacaaacaataatcacaaggat |
12932446 |
T |
|
| Q |
118 |
tcaacttagtacctttgtcagacggaatgagggacttccttgacaaaatttgcaatcctttttcacttagatgagccagcgttttatgccacaaatctgg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
12932445 |
tcaacttagtacctttgtcagacggaatgagggacttccttgacaaaatttgcaatcctttttcacttaaatgagccagccttttatgccacaaatctgc |
12932346 |
T |
|
| Q |
218 |
caaagtaacattctcgaccgcattcaagccatctttgatcagcttgacttgagttttgtaaagcgttgaatacacggcgcctctagcaatcatcaacgat |
317 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
12932345 |
caaagcaacattctcggccgcattcaagccatctttgatcagcttgacttgagttttgtaaagcgtcgaatacacgacgcctctagcaatcatcaacgat |
12932246 |
T |
|
| Q |
318 |
cctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatggacagagattagatttagacgcaaatctggcacat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932245 |
cctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatggacagagattagatttagacgcaaatctggcacat |
12932146 |
T |
|
| Q |
418 |
gtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttac |
517 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932145 |
gtcgcacgttcttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttac |
12932046 |
T |
|
| Q |
518 |
tttgccaaagtctcctactttatacatcgtaaagaattctttgttggaagtagcatgataagaagctgctgagtcaatgacccattcaacacatgaatct |
617 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932045 |
tttgccaaagtctcctactttgtacatcgtaaagaattctttattggaagtagcgtgataagaagctgctgagtcaatgacccattcaacacatgaatct |
12931946 |
T |
|
| Q |
618 |
gcaacatgacattcttcttcttcaactgaaagcaacaccacttccccatcaactactggggttgtggtattttcatcttcgtctggtctttgattcctcc |
717 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931945 |
gcaacatgacattcttcttcttcaacagaaaacaacaccacttccccatcaactactggggttgtggtattttcatcttcgtctggtctttgattcctcc |
12931846 |
T |
|
| Q |
718 |
ggtccttcttttctttgttcttccaagatttgcaatttcttttgatgtgaccttcttcgccgcagtgaaagcacttgaactttcttcgaggttgagattg |
817 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12931845 |
ggtctttcttttctttgttcttccaagatttgcaatttcttttgatgtgaccttcttcgttgcagtgaaaacacttgaactttcttcgaggttgagattg |
12931746 |
T |
|
| Q |
818 |
tgatctgtctttggatttattggatctccccccgctcttgcttctgcctctgttctccgtgacaagggcctgagagctacttgatcccatgtcttttctt |
917 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
12931745 |
tgatctgtctttggatttattggatctccccccgctcttgcttctgcctctgttctccgtgacaagggcatgagagctacttgatcccatgtattttctt |
12931646 |
T |
|
| Q |
918 |
cttgtttcttcattgaacatactatcttttacctgggacaaagtgagtgctccatctggagcagagttgcttaatgacaccaccaaagtttcccaacttt |
1017 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12931645 |
cttgtttcttcattgaacatactatcttttacctgggacaaagtgagcgctccatctggagcagagttgcttaatgacaccaccaaagtctcccaacttt |
12931546 |
T |
|
| Q |
1018 |
ccggcaaagaactcaaaagtaacagtgcttgtaattcgtcatccagcaccagcttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtg |
1117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931545 |
ttggcaaagaactcaaaagtaatagtgcttgtaattcatcattcagcaccaacttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtg |
12931446 |
T |
|
| Q |
1118 |
ctcggcaactgatcttccctcccgatactttaaattcaccaactttctaatagcgaaagttttgttttgtgcggtctttctttgatacatcttttcgatg |
1217 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931445 |
ctcggcaactgatcttccctcccggtactttagattcaccaactttctaatagcgaaagttttgttttgtgcggtctttctttgatacatcttttcgatg |
12931346 |
T |
|
| Q |
1218 |
ttcttccacagagtctgggcatttgtctctgtggccacatggtggaatacactaagatccacccactgcctaatcagactgacagccttccgatgagact |
1317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931345 |
ttcttccacagagtctgggcatttgtctctgtggccacatggtggaatacactaagatccacccactgcctaatcagactgacagccttccgatgagact |
12931246 |
T |
|
| Q |
1318 |
ttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggctt |
1417 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931245 |
ttttccagtcttcatccgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggctt |
12931146 |
T |
|
| Q |
1418 |
ccaaatggagtagtttgtagaagtgagtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctccaaccgga |
1517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931145 |
ccaaatggagtagtttgtagaagtgagtttaatcatcgtaccag---------tgttctcctccatttaatttacactatactctcgagctccaaccgga |
12931055 |
T |
|
| Q |
1518 |
gctctgatacca |
1529 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12931054 |
gctctgatacca |
12931043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1071 - 1529
Target Start/End: Complemental strand, 51303480 - 51303022
Alignment:
| Q |
1071 |
ttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtgctcggcaactgatcttccctcccgatactttaaattcaccaactttctaatag |
1170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
51303480 |
ttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtgctcgacaactgatcttccctcccgatactttaaattcaccaaatttttaatag |
51303381 |
T |
|
| Q |
1171 |
cgaaagttttgttttgtgcggtctttctttgatacatcttttcgatgttcttccacagagtctgggcatttgtctctgtggccacatggtggaatacact |
1270 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
51303380 |
cgaaagttttgttttgtgcgatctttctttgatacatctttttgatgttcttccacagagtctgggcatttgtctctatgaccacatggtggaatacact |
51303281 |
T |
|
| Q |
1271 |
aagatccacccactgcctaatcagactgacagccttccgatgagactttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctaca |
1370 |
Q |
| |
|
||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
51303280 |
aagatccacccgctgcctgatgagactgacagccttccgatgagactttttccagtcttcatttgtcaccttatatggcttagtgtctcccttttctaca |
51303181 |
T |
|
| Q |
1371 |
ggatcatacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttgtagaagtgagtttaatcatcgtaccagtgttaccag |
1470 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51303180 |
ggatcatacatatccttgcagtaaagtatatcctccatttttggcttccaaatggagtagtttgtagaagtgagtttaatcattgtaccagtgttaccaa |
51303081 |
T |
|
| Q |
1471 |
tgttctcctccatttaatttacactatactctcgagctccaaccggagctctgatacca |
1529 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||| ||||||| ||||||| |
|
|
| T |
51303080 |
tgttctcttccatttaatttacactataatctcgagctccaactggagctccgatacca |
51303022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 77 - 785
Target Start/End: Original strand, 24874000 - 24874710
Alignment:
| Q |
77 |
aactctatgttgcttgccaaacaaacagtaatcacaaggattcaacttagtacctttgtcagacggaatgagggacttccttgacaaaatttgcaatcct |
176 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| | |||||||||||||| ||||| ||| | || ||||||||||||||||| ||||||||||| | |
|
|
| T |
24874000 |
aactctatgttgcttcaaaaacaaacaacaatcatgataattcaacttagtacatttgtgagatgcaacgagggacttccttgacagaatttgcaatctt |
24874099 |
T |
|
| Q |
177 |
tttt-cacttagatgagccagcgttttatgccacaaatctggcaaagtaacattctcgaccgcattcaagccatctttgatcagcttgacttgagttttg |
275 |
Q |
| |
|
|||| ||||||| ||||||| | |||||||||||||||||| ||||| |||||||| |||| ||||| ||| ||||||||||| ||| |||||| ||||| |
|
|
| T |
24874100 |
tttttcacttaggtgagccatccttttatgccacaaatctgacaaagcaacattcttgaccacattcgagcaatctttgatcaacttaacttgatttttg |
24874199 |
T |
|
| Q |
276 |
taaagcgttgaatacacggcgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaa |
375 |
Q |
| |
|
|||||| | | |||||| || |||||| || |||||| | |||||||||| || || | ||||||||||||||||||||||||| ||| |||||| ||| |
|
|
| T |
24874200 |
taaagcctcggatacacatcgtctctagtaaccatcaatgctcctttggtaggtatc-actttccatcaccaaagttgttttgaagtccagctaaa-caa |
24874297 |
T |
|
| Q |
376 |
gagcatggacagagattagatttagacgcaaatctggcacatgtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacacatcacc |
475 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| ||||||||| ||||||||| |||||| |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
24874298 |
gagcatggacggagattatatttagacgcaaatctagcacatgtcgcacgtcctttagtgttggtgttaaaccgatattggtttgaacacacacatcatt |
24874397 |
T |
|
| Q |
476 |
aattccaacaatatctgcaatgctattattgcccatctttactttgccaa---agtctcctactttatacatcgtaaagaattctttgttggaagtagca |
572 |
Q |
| |
|
|||||||||||||||| |||| |||| ||| | ||||| |||||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||| |
|
|
| T |
24874398 |
aattccaacaatatctacaatattattgttgtctatcttgactttgccaacaaagtctcctactttgtacatcacaaagaattctttgttggaagtggca |
24874497 |
T |
|
| Q |
573 |
tgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaactgaaagcaacaccacttccccatcaacta |
672 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||| ||||||||||||| ||| | |||||||||||| |||||| ||||||||| || |||||||||| ||| |
|
|
| T |
24874498 |
tgataagaagatgcagagtcaacgacccatataacacatgaatctacaatacgacattcttctttttcaacaaaaagcaacatcatttccccatcaccta |
24874597 |
T |
|
| Q |
673 |
ctggggttgtggtattttcatcttcgtctggtctttgattcctccggtccttcttttctttgttcttccaagatttgcaatttcttttgatgtgaccttc |
772 |
Q |
| |
|
|| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| ||||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
24874598 |
ctaaggttgtggtattttcatcttcgtatggcatttgattcctcttatccttcttttctttgctcttccattgttttcaatttctttttatgtgaccttc |
24874697 |
T |
|
| Q |
773 |
ttcgccgcagtga |
785 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
24874698 |
tttgccgcagtga |
24874710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 963 - 1458
Target Start/End: Original strand, 24876227 - 24876720
Alignment:
| Q |
963 |
agtgctccatctggagcagagttgcttaatgacaccaccaaagtttcccaactttccggcaaagaactcaaaagtaacagtgcttgtaattcgtcatcca |
1062 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| ||| ||||||||| | ||| |||||||||||||||||||||| || || ||||| | |||| | |
|
|
| T |
24876227 |
agtgctccatctggagcatagttgcttaacgacactacccaagtttccctattttttggcaaagaactcaaaagtaacaatgattataatttggcatcga |
24876326 |
T |
|
| Q |
1063 |
gcaccagcttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtgctcggcaactgatcttccctcccgatactttaaattcaccaactt |
1162 |
Q |
| |
|
||| |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
24876327 |
acac----ttcatggcaaccaattggtttagcaagtattgaaagtcactcaagtgcttggcaaccgatcttccctcctgatactttaaattcaccaactt |
24876422 |
T |
|
| Q |
1163 |
tctaatagcgaaagttttgttttgtgcggtctttctttgatacatcttttcgatgttcttccacagagtctgggcatttgtctctgtg-gccacatggtg |
1261 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||| |||||||| |||| |||| |||||||||| |
|
|
| T |
24876423 |
tctaatagtgaaagttttgttttgtgcggtatttctttgatatatattttcgatgttcttccatggagtatgggcattcgtctatgtgccccacatggtg |
24876522 |
T |
|
| Q |
1262 |
gaatacactaagatccacccactgcctaatcagactgacagccttccgatgagac-tttttccagtcttcatctgtcaccttatctggcttcgtgtctcc |
1360 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| ||| |||||||| | || |||||||||||||||| || | |||||||||| ||||||||| |
|
|
| T |
24876523 |
gaatacactaagatccacccactgcctaagcaaactaacaaccttccgacaaaacttttttccagtcttcattcgtaattttatctggctccgtgtctcc |
24876622 |
T |
|
| Q |
1361 |
cttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttgtagaagtgagtttaatcatcgtac |
1458 |
Q |
| |
|
||||||| |||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
24876623 |
cttttctgcaggatcatatgtatcattgcagtaaagtatatcctccgttttcgacttccaaatgaagtagtttctagaagtgagtttaatcatcgtac |
24876720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 8e-31
Query Start/End: Original strand, 792 - 937
Target Start/End: Original strand, 24875544 - 24875688
Alignment:
| Q |
792 |
ttgaactttcttcgaggttgagattgtgatctgtctttggatttattggatctccccccgctcttgcttctgcctctgttctccgtgacaagggcctgag |
891 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||||||||||||||||||||||| || | |||||| |||||||||||||| ||||||||| || |||| |
|
|
| T |
24875544 |
ttgaacttttttcgaggttgagactgtaatctgtctttggatttattggatcaccatcagctcttacttctgcctctgttttccgtgacattggtttgag |
24875643 |
T |
|
| Q |
892 |
agctacttgatcccatgtcttttcttcttgtttcttcattgaacat |
937 |
Q |
| |
|
||||||||||||| |||| |||| ||||| ||||||||| |||||| |
|
|
| T |
24875644 |
agctacttgatcctatgt-ttttattcttatttcttcatcgaacat |
24875688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 292; Significance: 1e-163; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 451 - 1240
Target Start/End: Original strand, 38996099 - 38996890
Alignment:
| Q |
451 |
tattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatcgtaaa |
550 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || ||||||| |||| ||||| ||||||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
38996099 |
tattggtttaaacacacacatcaccaattccaacaatatttgtaatgctactatttcccatatttactttgtcaaagtctcctgctttgtacatcgtaaa |
38996198 |
T |
|
| Q |
551 |
gaattcttt-gttggaagtagcatgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaactgaaag |
649 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||| || ||||||||| | |||||||||| ||||| |||||| ||| ||||||||||||||||| |||| |
|
|
| T |
38996199 |
gaattcttttgttggaagtgacatgattagaagatgttgagtcaattatccattcaacaaatgaaactgcaatatggcattcttcttcttcaacataaag |
38996298 |
T |
|
| Q |
650 |
caacaccacttccccatcaactactgggg-ttgtggtattttcatcttcgtctggtctttgattcctccggtccttcttttctttgttcttccaagattt |
748 |
Q |
| |
|
|||| |||||||||||| || | ||||| ||||||||||||||||||| | ||| |||| ||||| |||||| |||| ||| |||||||||||||| |
|
|
| T |
38996299 |
caacgccacttccccattaagtgttgggggttgtggtattttcatcttccttaggtatttggttcctattgtccttattttattttttcttccaagattt |
38996398 |
T |
|
| Q |
749 |
gcaatttcttttgatgtgaccttcttcgccgcagtgaaagcacttgaactttcttcgaggttgagattgtgatctgtctttggatttattggatctcccc |
848 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||||||| | ||||||||| ||||| | ||||||| |||||| || |||||||||||||||| | | |
|
|
| T |
38996399 |
acaatttctttggatgtgatcttctccgccgcagtgataacacttgaacattctttaaagttgagactgtgataaatcattggatttattggatcactct |
38996498 |
T |
|
| Q |
849 |
ccgctcttgcttctgcctctgttctccgtgacaagggcctgagagctacttgatcccatgtcttttcttcttgtttcttcattgaacatactatctttta |
948 |
Q |
| |
|
| |||||| ||| | ||||| || ||| | | |||||| | |||| ||||||||| ||||||| |||||||| ||||||||| ||||| | ||||| | |
|
|
| T |
38996499 |
ctgctcttacttatacctctattttccattagaagggctttagagacacttgatcctatgtcttctcttcttgcttcttcattaaacatgttttctttca |
38996598 |
T |
|
| Q |
949 |
cctgggacaaagtgagtgctccatctggagcagagttgcttaatgacaccaccaaagtttcccaactttccggcaaagaactcaaaagtaacagtgcttg |
1048 |
Q |
| |
|
|| |||||||| ||| || |||| ||| | |||||||||||||||||||||||||||||||||||| || |||||||||||||||| || |||||| |
|
|
| T |
38996599 |
tttgtgacaaagtcagttcttcatcgagagtatagttgcttaatgacaccaccaaagtttcccaacttttcgtaaaagaactcaaaagtagcaatgcttg |
38996698 |
T |
|
| Q |
1049 |
taattcgtcatccagcaccagcttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtgctcggcaactgatcttccctcccgatacttt |
1148 |
Q |
| |
|
||||| |||||||| ||||| || || | |||||||||||||||||||||||||||||||| ||||||| | ||||||||||| || ||| ||||||| |
|
|
| T |
38996699 |
taatttgtcatccaacaccaactacaagacaaccaattggtttaccaagtcttgaaagtcaatcaagtgtttaacaactgatctttccccccaatacttt |
38996798 |
T |
|
| Q |
1149 |
aaattcaccaactttctaatagcgaaagttttgttttgtgcggtctttctttgatacatcttttcgatgttcttccacagagtctgggcatt |
1240 |
Q |
| |
|
| | ||||||||||||||||| | | | |||||| ||||| |||||||||||||| |||||||| |||||| |||||| ||| ||| |||| |
|
|
| T |
38996799 |
acaatcaccaactttctaatatcaacaattttgtgttgtggagtctttctttgataaatcttttcaatgttcatccacaaagtttggacatt |
38996890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 3e-73
Query Start/End: Original strand, 25 - 383
Target Start/End: Original strand, 38995721 - 38996083
Alignment:
| Q |
25 |
aatacaccatatccaatttattatctttcagctttgaagttctgctgaaagaaactctatgttgcttgccaaacaaacagtaatcacaaggattcaactt |
124 |
Q |
| |
|
|||||| |||||| || |||||||||| |||||||| ||| | | || || ||| |||||| || |||||||||| | ||||||||||||||||| || |
|
|
| T |
38995721 |
aatacatcatatctgatatattatctttaagctttgatgttttacaaaacgatactttatgtttctcgccaaacaaaaaataatcacaaggattcaattt |
38995820 |
T |
|
| Q |
125 |
agtacctttgtcagacggaatgagggacttccttgacaaaa-tttgcaatcctttttcacttagatgagccagcgttttatgccacaaatctggcaaagt |
223 |
Q |
| |
|
| |||||||||||| | |||| ||||||||||| |||| |||| ||||||||||||| ||||||||||||| ||||||||| |||| ||| |||| |
|
|
| T |
38995821 |
attacctttgtcaggtaggatgaaagacttccttgaaaaaaatttgtaatcctttttcacatagatgagccagccttttatgccgaaaatttggaaaagc |
38995920 |
T |
|
| Q |
224 |
aacattctcgaccgcattcaagccatctttgatcagcttgacttgagttttgtaaagcgttgaatacacggcgcctctagcaatcat---caacgatcct |
320 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||||||||| || | ||| ||||||||| ||||| |||||| ||| || |||||| |
|
|
| T |
38995921 |
atcattctcgaccgcattcaagccgtctttgatcagcttgacttgagttttatacaacgtcgaatacacgacgcctttagcaaccatataaaaagatcct |
38996020 |
T |
|
| Q |
321 |
ttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatgg |
383 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
38996021 |
ttgataagtttccattttccatcaccaaaattgttttgaaatttagctaaatcaagagcatgg |
38996083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 7e-25
Query Start/End: Original strand, 1275 - 1446
Target Start/End: Original strand, 38996901 - 38997071
Alignment:
| Q |
1275 |
tccacccactgcctaatcagactgacagccttccgatgagactttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctacaggat |
1374 |
Q |
| |
|
|||||| ||||||||| |||||||||| ||||| |||||||||||| |||| || ||| ||||| || ||| | ||| || |||||||||||||||| | |
|
|
| T |
38996901 |
tccaccaactgcctaaccagactgacaaccttcttatgagacttttttcagtttttatcagtcactttgtctag-ttcatgcctcccttttctacagggt |
38996999 |
T |
|
| Q |
1375 |
catacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttgtagaagtgagtt |
1446 |
Q |
| |
|
||||||||||| ||| |||| |||||||| |||||| | ||| || || ||||||||||||||||||||| |
|
|
| T |
38997000 |
catacatatccatgttataaattatatccttcattttcgacttttaactgaagtagtttgtagaagtgagtt |
38997071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 1172 - 1275
Target Start/End: Original strand, 38994363 - 38994466
Alignment:
| Q |
1172 |
gaaagttttgttttgtgcggtctttctttgatacatcttttcgatgttcttccacagagtctgggcatttgtctctgtggccacatggtggaatacacta |
1271 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||| ||||| ||| |||||||| ||| | ||||||||||||| |||||||||||||||| ||| || |
|
|
| T |
38994363 |
gaaaattttgttttgtgcggtatttctttgatacatattttcactgtccttccacaaagtttaggcatttgtctctatggccacatggtggaaaacaata |
38994462 |
T |
|
| Q |
1272 |
agat |
1275 |
Q |
| |
|
|||| |
|
|
| T |
38994463 |
agat |
38994466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1311 - 1394
Target Start/End: Original strand, 38994541 - 38994624
Alignment:
| Q |
1311 |
tgagactttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaa |
1394 |
Q |
| |
|
||||||| ||| ||||||||||| |||| || |||| |||| |||| |||||||||||| || ||||||||||||||| |||| |
|
|
| T |
38994541 |
tgagactctttttagtcttcatctatcactttgtctgacttcatgtcccccttttctacatgaacatacatatccttgttgtaa |
38994624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 6e-81; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 6e-81
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 15298336 - 15298159
Alignment:
| Q |
18 |
acatcagaatacaccatatccaatttattatctttcagctttgaagttctgctgaaagaaactctatgttgcttgccaaacaaacagtaatcacaaggat |
117 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
15298336 |
acattagaataccccatatccaatttattatctttcagctttgaagttctgctgaaagaaactctatgttgcttgctaaacaaacagtaagcacaaggat |
15298237 |
T |
|
| Q |
118 |
tcaacttagtacctttgtcagacggaatgagggacttccttgacaaaatttgcaatcctttttcacttagatgagcca |
195 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15298236 |
tcaacttagtacctttttcagatggaatgagggacttccttgacaaaatttgcaatcctttttcacttagatgagcca |
15298159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 2e-68
Query Start/End: Original strand, 199 - 375
Target Start/End: Complemental strand, 15290789 - 15290614
Alignment:
| Q |
199 |
ttttatgccacaaatctggcaaagtaacattctcgaccgcattcaagccatctttgatcagcttgacttgagttttgtaaagcgttgaatacacggcgcc |
298 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| |||| |||||| |||||||||| ||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
15290789 |
ttttatgccacaaatttggcaaagcaacattctcgactgcat-caagccctctttgatcaacttgacttgagttttgtaaagtgtcgaatacacggcgcc |
15290691 |
T |
|
| Q |
299 |
tctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaa |
375 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15290690 |
tctagtaaccatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaa |
15290614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1475 - 1513
Target Start/End: Original strand, 2757156 - 2757194
Alignment:
| Q |
1475 |
ctcctccatttaatttacactatactctcgagctccaac |
1513 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2757156 |
ctcctccatttaatttacactataatctcgagctccaac |
2757194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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