View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8977_low_14 (Length: 245)
Name: NF8977_low_14
Description: NF8977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8977_low_14 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 37054033 - 37054267
Alignment:
| Q |
11 |
acacgttcatgatcatcaaaacaagtgatgaagacggataggaattccctctgttggtataggtatcaaagcgccagatacttcctcatcaggaagcata |
110 |
Q |
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| T |
37054033 |
acacgttcatgatcatcaaaacaagtgatgaagacggataggaattccctctgttggtataggtatcatagcaccagatacttcctcatcaggaagcata |
37054132 |
T |
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| Q |
111 |
acttcccatttgaactttgttacaagattgtgaatgaaagtgagaatcgcaagccgtgtgtaatcctttccaggacaagatcttggtcctgatccaaagg |
210 |
Q |
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| T |
37054133 |
acttcccatttgaactttgttacaagattgtgaatgaaagtgagaatcgcaagccgtgtgtaatcctttccaggacaagatcttggtcctgatccaaagg |
37054232 |
T |
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| Q |
211 |
gtatataagtgtatggtgcaggaacattattccct |
245 |
Q |
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| T |
37054233 |
gtatataagtgtatggtgcaagaacattattccct |
37054267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 13102144 - 13102017
Alignment:
| Q |
34 |
agtgatgaagacggataggaattccctctgttggtataggtatcaaagcgccagatacttcctcatcaggaagcataacttcccatttgaactttgttac |
133 |
Q |
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|||||||||||| |||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13102144 |
agtgatgaagacagataggaattccctatattggtataggtatcaaagcaccatatacttcctcatcaggaagcataacttcccatttgaactttgttat |
13102045 |
T |
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| Q |
134 |
aagattgtgaatgaaagtgagaatcgca |
161 |
Q |
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| T |
13102044 |
aagattgtgaatgaaagtgagaatcgca |
13102017 |
T |
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