View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8977_low_2 (Length: 1073)
Name: NF8977_low_2
Description: NF8977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8977_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 366 - 974
Target Start/End: Complemental strand, 326373 - 325767
Alignment:
| Q |
366 |
aatgctcctccatgagtgcaatgccagaagcactcgttttgcttatagattctttttcagcacactctttatatttgaaatttatgtcggtctcatcatt |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
326373 |
aatgctcctccatgagtgcaatgccagaagcactcgttttgcttatagattctttttcagcacactctttatatttgaaatttatgtcggtctcatcatt |
326274 |
T |
|
| Q |
466 |
ttgagaataggtctcaatcaattaaaaatcgagtccaaatgatttagtgagactcatgtgaatttccttgaataatagagtgtgttatttgcgttactct |
565 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
326273 |
ttgagaataggtctcaatcaattaaaaatcgagttcaaatgatttagtgagactcatgtgaatttccttgaataatagagtgtgttatttgcgttactct |
326174 |
T |
|
| Q |
566 |
tttgattatgtttatttagnnnnnnnnnnatattatgtttagatgttgctctttttgcatatcttaatcatttttgaaagctgggttcgggtattttctc |
665 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
326173 |
tttgattatgtttatttagttttttttt--tattatgtttagatgttgctccttttgcatatcttaatcatttttgaaagctgggttcgggtattttctc |
326076 |
T |
|
| Q |
666 |
ttgatggagttttgagaaagttttttgttagttagaaatcagtggtcaacttttttgtcattatggtactaactaattaaaattagctagagtatagtgt |
765 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
326075 |
ttgatggagttttgagaaagttttttgttagttagaaatcagtggtcaacttttttgtcattatggtactaactatttaaaattagctagagtatagtgt |
325976 |
T |
|
| Q |
766 |
tttcctttcttaaagtgtttttccacaatccctttttactctttacgtctactttcacgtcataacagtgccctgaagtttttattaaatggttgtaaat |
865 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
325975 |
tttcctttcttaaagtgtttttccacaatccctttttactctttacgtctactttcacgtcataacagtgccctaaagtttttattaaatggttgtaaat |
325876 |
T |
|
| Q |
866 |
gcatgtaaaaagaattacgtgtttcattgaaggacaatccttattgactaaaactagttcatccgagtccgatataaattatattgctaatatatttcat |
965 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
325875 |
gcatgtaaaaagaattacgtgtttcattgaaggacaatccttattgactaaaactagttcatccgagtccgatataaattatattgctaatatatttcat |
325776 |
T |
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| Q |
966 |
gctttttaa |
974 |
Q |
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||||||||| |
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| T |
325775 |
gctttttaa |
325767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 122 - 412
Target Start/End: Original strand, 530887 - 531176
Alignment:
| Q |
122 |
atgatgtttcgtcgtattgcagaggtttcggagatgaggatcaacaccctgctaatgctattgaagaacctgttgcaatcagacaggatgaggaagccag |
221 |
Q |
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|||||||||| | ||||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||||| |
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| T |
530887 |
atgatgtttcattgtattgcagaggtttcggagacgaggattaacaccctgctaatgctgttgaaaaacctcttgcaatcagacaggacgaggaagccag |
530986 |
T |
|
| Q |
222 |
ttcaacaaatcatagcaaaggaaatggcgtctgggagctcaaaaagctgggtagcttaaagaaagtatagacctagagatctgtgcacgggaaaaccata |
321 |
Q |
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|||| ||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||| ||||||||||| |
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| T |
530987 |
ttcagcaaatcatagcaaaggaaatgtgg-ctgggagctcaaaaacctgggtagcttaaagaaagtataaacatatagatccgtgcatgggaaaaccatg |
531085 |
T |
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| Q |
322 |
aggaggagcctccttaaggagtgggctgttctaaattatcattcaatgctcctccatgagtgcaatgccagaagcactcgttttgcttata |
412 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
531086 |
aggaagagcctccttaaggagtgggctgttctaaattattattcaatgctcctcggggagtgcaatgccggaagcactcgttttgcttata |
531176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 119 - 409
Target Start/End: Original strand, 517636 - 517924
Alignment:
| Q |
119 |
cttatgatgtttcgtcgtattgcagaggtttcggagatgaggatcaacaccctgctaatgctattgaagaacctgttgcaatcagacaggatgaggaagc |
218 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
517636 |
cttatgatgtttcgtcgtattgcagaggttttggagacgaggatcaaaaccctgctaatgctgttgaagaacctgttgcaatcagacaggatgaggaagc |
517735 |
T |
|
| Q |
219 |
cagttcaacaaatcatagcaaaggaaatggcgtctgggagctcaaaaagctgggtagcttaaagaaagtatagacctagagatctgtgcacgggaaaacc |
318 |
Q |
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||||||| ||| |||||||||||||||| | ||||||||| ||||||| ||||||||||| |||||||||| |||| |||||| |||| || |||||| |
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| T |
517736 |
cagttcagcaactcatagcaaaggaaat-gtgtctgggagttcaaaaacctgggtagctt-aagaaagtattgaccaggagatccatgcaaggaaaaacc |
517833 |
T |
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| Q |
319 |
ataaggaggagcctccttaaggagtgggctgttctaaattatcattcaatgctcctccatgagtgcaatgccagaagcactcgttttgctt |
409 |
Q |
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|| |||| ||||||| || || |||||||| ||||||||| | |||||||||||||| ||||||||||| |||||||||| |||||||| |
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| T |
517834 |
atgaggaagagcctctttcagaagtgggctattctaaatttgtagtcaatgctcctccaagagtgcaatgcaagaagcactcattttgctt |
517924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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