View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8977_low_4 (Length: 643)
Name: NF8977_low_4
Description: NF8977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8977_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 609; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 19 - 635
Target Start/End: Original strand, 9071834 - 9072450
Alignment:
| Q |
19 |
caattagtgccaaaggggttatgtggaatagagcaatacaatggaattctaatgcgttatgttacagcttctagtgcttacctaggaaaccaagaggatg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9071834 |
caattagtgccaaaggggttatgtggaatagagcaatacaatggaattctaatgcgttatgttacagcttctagtgcttacctaggaaaccaagaggatg |
9071933 |
T |
|
| Q |
119 |
cattagactttgatatcacatattatcgtagcaaagatccaatggctcctaggctttatgaagacattcttgaagagattgaacaaattggaattttcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9071934 |
cattagactttgatatcacatattatcgtagcaaagatccaatggctcctaggctttatgaagacattcttgaagagattgaacaaattggaattttcaa |
9072033 |
T |
|
| Q |
219 |
gtatggagggttacctcattggggtaagaatagaaatgtggcatttgaaggagttttcaagaagtacaaagatattgagaaatttttgaaggttaaagag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9072034 |
gtatggagggttacctcattggggtaagaatagaaatgtggcatttgaaggagttttcaaaaagtacaaagatattgagaaatttttgaaggttaaagag |
9072133 |
T |
|
| Q |
319 |
aaatatgattcacaaggacttttctctagtacatggacagatcaagtgcttggaataaaagaaggtgtgacaatattgaaaaatgggtgtgcattagaag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9072134 |
aaatatgattcacaaggacttttctctagtacatggacggatcaagtgcttggaataaaagaaggtgtgacaatattgaaaaatgggtgtgcattagaag |
9072233 |
T |
|
| Q |
419 |
gtttgtgtatttgttcacaagatagccattgcaatccaagtaaagggtacttttgtagaccgggcaaaatttacaaggacgcaagagtttgttctcgtgt |
518 |
Q |
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| T |
9072234 |
gtttgtgtatttgttcacaagatagccattgcaatccaagtaaagggtacttttgtagaccgggcaaaatttacaaggacgcaagagtttgttctcgtgt |
9072333 |
T |
|
| Q |
519 |
gtaatttaattggggggctaagatttaaaatatacatggtcattttttcttgaagaaatataaacatggtcatttgttaaggttaaatatttatcattaa |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9072334 |
gtaatttaattggggggctaagatttaaaatatacatggtcattttttcttgaagaaatataaacatggtcatttgttaaggttaaatatttatcattaa |
9072433 |
T |
|
| Q |
619 |
ctttctaaaagaataat |
635 |
Q |
| |
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||||||||||||||||| |
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| T |
9072434 |
ctttctaaaagaataat |
9072450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 122 - 323
Target Start/End: Original strand, 9059221 - 9059423
Alignment:
| Q |
122 |
tagactttgatatcacatattatcgtagcaaagatccaatggctcctaggctttatgaagacattcttgaagagattgaacaaattggaattttcaagta |
221 |
Q |
| |
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|||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||| || ||||| || || |
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| T |
9059221 |
tagactttgaattcacgtattaccgtagcaaagatccaatgactcctaggctttatgaagacgtttttgaagagattgagcaaatagggatttttaaata |
9059320 |
T |
|
| Q |
222 |
tggagggttacctcattggggtaagaatagaaatgtggcattt-gaaggagttttcaagaagtacaaagatattgagaaatttttgaaggttaaagagaa |
320 |
Q |
| |
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||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||||||||||||| ||| || | | | |||||||||||||||| ||||| |
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| T |
9059321 |
tggagggttgcctcattgggggaagaataggaatttggcatttcgaaggagttttcaagaagtataaaaatgtggggcaatttttgaaggttaatgagaa |
9059420 |
T |
|
| Q |
321 |
ata |
323 |
Q |
| |
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||| |
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|
| T |
9059421 |
ata |
9059423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 345 - 464
Target Start/End: Original strand, 9059422 - 9059541
Alignment:
| Q |
345 |
tagtacatggacagatcaagtgcttggaataaaagaaggtgtgacaatattgaaaaatgggtgtgcatt---agaaggtttgtgtatttgttcacaagat |
441 |
Q |
| |
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|||||| ||||| |||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| |
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| T |
9059422 |
tagtacttggacggatcaaatgcttggattaaaag---gtgtgacaatattgaaaaatgggtgtgcattagaagaaggtttgtgtatttgctctcaagat |
9059518 |
T |
|
| Q |
442 |
agccattgcaatccaagtaaagg |
464 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
9059519 |
agtcattgcaatccaagtaaagg |
9059541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 54 - 442
Target Start/End: Original strand, 49016168 - 49016554
Alignment:
| Q |
54 |
atacaatggaattctaatgcgttatgttacagcttctagtgcttacctaggaaaccaagaggatgcattagactttgatatcacatattatcgtagcaaa |
153 |
Q |
| |
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|||||||||||| || ||||| || |||||| |||||||||| ||| | |||||| ||| |||| | || || || ||||||||||| ||||| ||| |
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| T |
49016168 |
atacaatggaatccttatgcgctacgttacaacttctagtgcatacttgggaaacacaga--atgctgtggatttcgacatcacatattaccgtagtaaa |
49016265 |
T |
|
| Q |
154 |
gatccaatggctcctaggctttatgaagacattcttgaagagattgaacaaattggaattttcaagtatggagggttacctcattggggtaagaatagaa |
253 |
Q |
| |
|
|||||| || |||||||||||| ||||||||| |||||||||| ||||||||||| | ||||| |||||||||||||| |||||||| || ||||||| |
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| T |
49016266 |
gatccattgactcctaggctttttgaagacataattgaagagatagaacaaattgggttgttcaaatatggagggttaccacattgggggaaaaatagaa |
49016365 |
T |
|
| Q |
254 |
atgtggcatttgaaggagttttcaagaagtacaaagatattgagaaatttttgaaggttaaagagaaatatgattcacaaggacttttctctagtacatg |
353 |
Q |
| |
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| | | ||||| |||| || ||||| || | | || ||||||||||||||||| | |||||||||| ||| |||||||||||| || |
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| T |
49016366 |
acttaggatttgtgggagcaatccgtaagtataagaaagcaggtaagtttttgaaggttaaagaagagtatgattcacgaggtcttttctctagtgagtg |
49016465 |
T |
|
| Q |
354 |
gacagatcaagtgcttggaataaaagaaggtgtgacaatattgaaaaatgggtgtgcattagaaggtttgtgtatttgttcacaagata |
442 |
Q |
| |
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|||| | |||||||||||| | |||||||| ||||||||||| ||| |||| |||||||| ||||| |||||||| || |||||||||| |
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| T |
49016466 |
gacaaaccaagtgcttggacttaaagaaggggtgacaatattaaaagatggatgtgcattggaagggttgtgtatatgctcacaagata |
49016554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 55 - 449
Target Start/End: Complemental strand, 490587 - 490193
Alignment:
| Q |
55 |
tacaatggaattctaatgcgttatgttacagcttctagtgcttacctaggaaaccaagaggatgcattagactttgatatcacatattatcgtagcaaag |
154 |
Q |
| |
|
||||||||||| || ||||||||||||||| |||||||||| ||| | ||||| ||| ||||| | || ||||| |||| |||||| || || |||| |
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| T |
490587 |
tacaatggaatcctcatgcgttatgttacaacttctagtgcatacttgggaaaaacagaagatgctgtggaatttgacatcatatattaccgcagtaaag |
490488 |
T |
|
| Q |
155 |
atccaatggctcctaggctttatgaagacattcttgaagagattgaacaaattggaattttcaagtatggagggttacctcattggggtaagaatagaaa |
254 |
Q |
| |
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||||| || ||||||||||||||||||| || |||||||||| |||||||| ||| | ||||| |||||||||||||| |||||||| || |||||||| |
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| T |
490487 |
atccattgactcctaggctttatgaagatataattgaagagatagaacaaataggattgttcaaatatggagggttaccccattggggaaaaaatagaaa |
490388 |
T |
|
| Q |
255 |
tgtggcatttgaaggagttttcaagaagtacaaagatattgagaaatttttgaaggttaaagagaaatatgattcacaaggacttttctctagtacatgg |
354 |
Q |
| |
|
| | | ||||| || | | || || || || | | | ||||||||||||||| |||||||||| | | |||||||||||||| ||| |
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|
| T |
490387 |
tataggatttgtgggggcaataaaaaaatataataaggcaaataggtttttgaaggttaaaaagaaatatgacccgaagagacttttctctagtgattgg |
490288 |
T |
|
| Q |
355 |
acagatcaagtgcttggaataaaagaaggtgtgacaatattgaaaaatgggtgtgcattagaaggtttgtgtatttgttcacaagatagccattg |
449 |
Q |
| |
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||||| |||||||||||| | |||||||| ||||||||||| ||| |||| |||||||| ||||| |||||||| || ||| ||||||| ||||| |
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| T |
490287 |
acagaccaagtgcttggacttaaagaaggggtgacaatattaaaagatggatgtgcattggaagggttgtgtatatgctcaaaagatagtcattg |
490193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 22 - 284
Target Start/End: Original strand, 10812919 - 10813180
Alignment:
| Q |
22 |
ttagtgccaaaggggttatgtggaatagagcaatacaatggaattctaatgcgttatgttacagcttctagtgcttacctaggaaaccaagaggatgcat |
121 |
Q |
| |
|
|||| |||||| || ||||||||||| || ||| ||| || || |||||||| |||||| || ||||| | ||||||| |||| |||||| | |||| |
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|
| T |
10812919 |
ttagagccaaaaggtttatgtggaattgaacaaaacattgaaactctaatgcattatgtcaccgcttccaatgcttacttagggaaccaaaaaaatgcta |
10813018 |
T |
|
| Q |
122 |
tagactttgatatcacatattatcgtagcaaagatccaatggctcctaggctttatgaagacattcttgaagagattgaacaaattggaattttcaagta |
221 |
Q |
| |
|
|| |||||| || ||||||| ||| ||||||||| |||||||||||| ||||||||||||||| | ||||||||||||||||||| | | | || || |
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|
| T |
10813019 |
gggaatttgatttcgcatattaccgtggcaaagatctaatggctcctagactttatgaagacattttgaaagagattgaacaaattggga-tataaaata |
10813117 |
T |
|
| Q |
222 |
tggagggttacctcattggggtaagaatagaaatgtggcatttgaaggagttttcaagaagta |
284 |
Q |
| |
|
||||||| | || ||||||||||| |||| || | |||||||||||||||||||||||||| |
|
|
| T |
10813118 |
tggagggctgccacattggggtaatcataggaaccttgcatttgaaggagttttcaagaagta |
10813180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 10811722 - 10811580
Alignment:
| Q |
66 |
tctaatgcgttatgttacagcttctagtgcttacctaggaaaccaagaggatgcattagactttgatatcacatattatcgtagcaaagatccaatggct |
165 |
Q |
| |
|
|||||||| | |||| || ||||| | ||||||| |||| |||||||| ||| || | |||||| || ||||||||||||||||||||| ||||||| |
|
|
| T |
10811722 |
tctaatgcataatgtcaccgcttccaatgcttacttagggaaccaagaaaatgttgtaaagtttgatctcgcatattatcgtagcaaagatctaatggct |
10811623 |
T |
|
| Q |
166 |
cctaggctttatgaagacattcttgaagagattgaacaaattg |
208 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
10811622 |
cctagactttatgaagacatttttgaagagattgaacaaattg |
10811580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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