View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8977_low_7 (Length: 393)

Name: NF8977_low_7
Description: NF8977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8977_low_7
NF8977_low_7
[»] chr8 (14 HSPs)
chr8 (1-377)||(23286026-23286402)
chr8 (89-377)||(23392236-23392542)
chr8 (26-66)||(30454097-30454137)
chr8 (26-66)||(12670250-12670290)
chr8 (26-66)||(26102612-26102652)
chr8 (26-67)||(17823671-17823712)
chr8 (33-66)||(27037650-27037683)
chr8 (30-66)||(6760923-6760959)
chr8 (26-66)||(12625985-12626025)
chr8 (30-66)||(20870024-20870060)
chr8 (26-66)||(27468092-27468132)
chr8 (26-66)||(31457267-31457307)
chr8 (26-66)||(35261774-35261814)
chr8 (26-66)||(39460994-39461034)
[»] chr3 (24 HSPs)
chr3 (1-66)||(4495676-4495741)
chr3 (5-66)||(43956472-43956533)
chr3 (4-66)||(54032571-54032633)
chr3 (4-67)||(31831280-31831344)
chr3 (26-66)||(34771364-34771404)
chr3 (26-66)||(1217205-1217245)
chr3 (26-66)||(30452912-30452952)
chr3 (26-66)||(31592964-31593004)
chr3 (26-66)||(6242285-6242325)
chr3 (26-66)||(15797337-15797377)
chr3 (26-65)||(22122918-22122957)
chr3 (27-66)||(24851301-24851340)
chr3 (29-67)||(39203634-39203672)
chr3 (26-66)||(516529-516569)
chr3 (26-66)||(10484616-10484656)
chr3 (26-66)||(13628790-13628830)
chr3 (30-66)||(13730602-13730638)
chr3 (26-66)||(24577952-24577992)
chr3 (26-66)||(24578042-24578082)
chr3 (26-66)||(26292447-26292487)
chr3 (26-66)||(40272812-40272852)
chr3 (26-66)||(40390358-40390398)
chr3 (26-66)||(47624216-47624256)
chr3 (26-66)||(54484808-54484848)
[»] chr7 (14 HSPs)
chr7 (26-67)||(48735121-48735162)
chr7 (26-66)||(21172009-21172049)
chr7 (26-66)||(32758354-32758394)
chr7 (26-66)||(42391100-42391140)
chr7 (26-67)||(10693072-10693113)
chr7 (29-66)||(31591109-31591146)
chr7 (26-65)||(18747582-18747621)
chr7 (28-65)||(11741890-11741927)
chr7 (26-59)||(21566531-21566564)
chr7 (28-65)||(42476968-42477005)
chr7 (26-66)||(32233135-32233175)
chr7 (26-66)||(36602542-36602582)
chr7 (26-66)||(42798764-42798804)
chr7 (30-66)||(42805625-42805661)
[»] scaffold0168 (1 HSPs)
scaffold0168 (26-66)||(30672-30712)
[»] scaffold0015 (1 HSPs)
scaffold0015 (26-66)||(48634-48674)
[»] chr6 (8 HSPs)
chr6 (26-66)||(1347057-1347097)
chr6 (26-66)||(1354757-1354797)
chr6 (26-66)||(25557818-25557858)
chr6 (26-66)||(26097253-26097293)
chr6 (31-66)||(25997749-25997784)
chr6 (26-67)||(10734904-10734945)
chr6 (30-66)||(12892108-12892144)
chr6 (26-66)||(29355855-29355895)
[»] chr5 (14 HSPs)
chr5 (26-66)||(16028624-16028664)
chr5 (26-66)||(32703517-32703557)
chr5 (26-67)||(30877563-30877604)
chr5 (26-67)||(34154813-34154854)
chr5 (29-66)||(35710409-35710446)
chr5 (28-64)||(11462922-11462958)
chr5 (26-65)||(19438761-19438800)
chr5 (26-63)||(7368491-7368528)
chr5 (26-55)||(22861680-22861709)
chr5 (26-66)||(1405282-1405322)
chr5 (34-66)||(10943845-10943877)
chr5 (26-66)||(16957409-16957449)
chr5 (26-66)||(38879678-38879718)
chr5 (30-66)||(41014417-41014453)
[»] chr4 (27 HSPs)
chr4 (26-66)||(11054148-11054188)
chr4 (26-66)||(20225077-20225117)
chr4 (26-66)||(38786704-38786744)
chr4 (26-66)||(54175160-54175200)
chr4 (27-62)||(28494247-28494282)
chr4 (26-64)||(29207900-29207938)
chr4 (26-66)||(23501884-23501924)
chr4 (26-66)||(32484328-32484368)
chr4 (26-62)||(39077800-39077836)
chr4 (26-65)||(8473621-8473660)
chr4 (26-67)||(11394947-11394988)
chr4 (26-67)||(11404674-11404715)
chr4 (33-66)||(19028013-19028046)
chr4 (30-67)||(20225175-20225212)
chr4 (26-67)||(30690175-30690216)
chr4 (26-67)||(38755907-38755948)
chr4 (26-67)||(40553936-40553977)
chr4 (26-67)||(44363129-44363170)
chr4 (29-66)||(48598825-48598862)
chr4 (26-66)||(9832313-9832353)
chr4 (30-66)||(16408601-16408637)
chr4 (26-66)||(20639658-20639698)
chr4 (26-66)||(25629144-25629184)
chr4 (26-66)||(30639474-30639514)
chr4 (26-66)||(35532087-35532127)
chr4 (26-66)||(35567265-35567305)
chr4 (26-66)||(47528530-47528570)
[»] chr2 (11 HSPs)
chr2 (26-66)||(21779261-21779301)
chr2 (26-67)||(23397859-23397900)
chr2 (26-67)||(14530415-14530456)
chr2 (26-67)||(40416870-40416911)
chr2 (26-66)||(9671274-9671314)
chr2 (26-66)||(10543795-10543835)
chr2 (26-66)||(10546258-10546298)
chr2 (26-66)||(22371207-22371247)
chr2 (26-66)||(34080196-34080236)
chr2 (30-62)||(39189508-39189540)
chr2 (26-66)||(44643618-44643658)
[»] chr1 (16 HSPs)
chr1 (26-66)||(19414555-19414595)
chr1 (26-66)||(34725098-34725138)
chr1 (26-66)||(38478282-38478322)
chr1 (26-63)||(10378738-10378775)
chr1 (26-66)||(23796583-23796623)
chr1 (26-66)||(35253187-35253227)
chr1 (26-62)||(45812541-45812577)
chr1 (26-66)||(50606521-50606561)
chr1 (26-67)||(4349756-4349797)
chr1 (26-66)||(10668345-10668385)
chr1 (26-66)||(14617156-14617196)
chr1 (26-66)||(16120834-16120874)
chr1 (30-66)||(20004090-20004126)
chr1 (26-66)||(20999850-20999890)
chr1 (26-54)||(47214627-47214655)
chr1 (26-66)||(50760240-50760280)
[»] scaffold0223 (1 HSPs)
scaffold0223 (26-67)||(11224-11265)
[»] scaffold0180 (1 HSPs)
scaffold0180 (26-66)||(24133-24173)
[»] scaffold0057 (2 HSPs)
scaffold0057 (26-66)||(43753-43793)
scaffold0057 (26-66)||(46926-46966)


Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 23286402 - 23286026
Alignment:
Q  1 gcgtacaatacaccaaatggtggggccctgcatatgcgggagctctagtgcaccgggctgccctttagttgtacatgtttttgatgattaatcatgcttt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23286402 gcgtacaatacaccaaatggtgggaccctgcatatgcgggagctctagtgcaccgggctgccctttagttgtacatgtttttgatgattaatcatgcttt 23286303  T
Q  101 gcatctttcagattacattagtgttgatgtccctagaagcatgaaaaagcggctggtgcggatcacagttggcctgattactgttggatttttaacatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23286302 gcatctttcagattacattagtgttgatgtccctagaagcatgaaaaagcggctggtgcggatcacagttggcctgattactgttggatttttaacatgt 23286203  T
Q  201 gcctgcataataatatttataaggaaaggtgagttttgaattagatttagtaacaattaaaatagtatgcaagcatccatatttaaatttacattctaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23286202 gcctgcataataatatttataaggaaaggtgagttttgaattagatttagtaacaattaaaatagtatgcaagcatccatatttaaatttacattctaaa 23286103  T
Q  301 gcctaaacttgtttgttgtagtaactaaattcttgatgttgtcctgttgcacatttcagtggcaccaaggttatatc 377  Q
    |||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  23286102 gcctaaacttgtttgttgtagtaactaaatacttgatgttgttatgttgcacatttcagtggcaccaaggttatatc 23286026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 89 - 377
Target Start/End: Original strand, 23392236 - 23392542
Alignment:
Q  89 taatcatgctttgcatctttcagattacattagtgttgatgtccctagaagcatgaaaaagcggctggtgcggatcacagttggcctgattactgttgga 188  Q
    |||||||||||||  ||||||||||||| |||||||||| || ||| ||||||  |||||||||||| ||||||||||||||||||| |||||| |||||    
T  23392236 taatcatgctttgtttctttcagattactttagtgttgaagttcctggaagcacaaaaaagcggctgatgcggatcacagttggcctaattactattgga 23392335  T
Q  189 tttttaacatgtgcctgcataataatatttataaggaaaggtgagttttgaattagatttagtaacaattaaaatag--tatgcaagcatccatatttaa 286  Q
    ||||| ||||||||||| ||||||||| ||||| ||| |||| | ||||||||| |||  |||||||||||||||||  |||||||||||| ||||||||    
T  23392336 tttttcacatgtgcctgaataataata-ttatagggagaggtaaattttgaattcgatacagtaacaattaaaatagtatatgcaagcatctatatttaa 23392434  T
Q  287 -----------------atttacattctaaagcctaaacttgtttgttgtagtaactaaattcttgatgttgtcctgttgcacatttcagtggcaccaag 369  Q
                      ||||||||| |||||||||||||||||||||||||||  || |||||||||||||| |||||||||||||||||||||||||    
T  23392435 gttttttgaaaattctggtttacattcaaaagcctaaacttgtttgttgtagtaatgaatttcttgatgttgtcatgttgcacatttcagtggcaccaag 23392534  T
Q  370 gttatatc 377  Q
    ||||||||    
T  23392535 gttatatc 23392542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 30454137 - 30454097
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  30454137 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 30454097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 12670290 - 12670250
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| | ||||||    
T  12670290 ccctgcatatgcgggagctctagtgcaccgggttacccttt 12670250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 26102612 - 26102652
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| ||||||||||||||||||||||||| ||||||||    
T  26102612 ccctgcttatgcgggagctctagtgcaccgggttgcccttt 26102652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 17823671 - 17823712
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    |||||||||||| |||||| |||||||||||| |||||||||    
T  17823671 ccctgcatatgcaggagctttagtgcaccgggttgcccttta 17823712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 27037650 - 27037683
Alignment:
Q  33 tatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||| |||||||||||||||||||||||    
T  27037650 tatgcgggagttctagtgcaccgggctgcccttt 27037683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 6760923 - 6760959
Alignment:
Q  30 gcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  6760923 gcatatgcgggagctttagtgcaccgggttgcccttt 6760959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 12625985 - 12626025
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  12625985 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 12626025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 20870024 - 20870060
Alignment:
Q  30 gcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  20870024 gcatatgcgggagctttagtgcaccgggttgcccttt 20870060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 27468132 - 27468092
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  27468132 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 27468092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 31457267 - 31457307
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| ||||||||||||||||||||||||  ||||||||    
T  31457267 ccctgcgtatgcgggagctctagtgcaccggattgcccttt 31457307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 35261774 - 35261814
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  35261774 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 35261814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 39461034 - 39460994
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  39461034 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 39460994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4495741 - 4495676
Alignment:
Q  1 gcgtacaatacaccaaatggtggggccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||| |||||| |||||||||||| |||||||||||| ||||||||    
T  4495741 gcgtacaatacaccaaatggtgggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 4495676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 43956533 - 43956472
Alignment:
Q  5 acaatacaccaaatggtggggccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||| ||| || |||||||||||| |||||||||||||||||||||    
T  43956533 acaatacaccaaatggtgggacccagcgtatgcgggagctttagtgcaccgggctgcccttt 43956472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 54032633 - 54032571
Alignment:
Q  4 tacaatacaccaaatggtggggccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||| ||||||||| |||||| |||||||||||| |||||||||||| ||||||||    
T  54032633 tacaatacaccgaatggtgggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 54032571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 31831280 - 31831344
Alignment:
Q  4 tacaatacaccaaatggtgggg-ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    ||||||||||||||||||  || ||||||||||||||| |||||||||||||||| |||||||||    
T  31831280 tacaatacaccaaatggtccggaccctgcatatgcgggtgctctagtgcaccgggttgcccttta 31831344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 34771404 - 34771364
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34771404 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 34771364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 1217205 - 1217245
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  1217205 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 1217245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 30452912 - 30452952
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  30452912 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 30452952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 31592964 - 31593004
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  31592964 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 31593004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 6242325 - 6242285
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  6242325 ccctgcatatgcaggagctctagtgcaccgggttgcccttt 6242285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 15797337 - 15797377
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  15797337 ccctgcatatgtgggagctctagtgcaccgggttgcccttt 15797377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 22122957 - 22122918
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgccctt 65  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  22122957 ccctgcatatgcgagagctctagtgcaccgggttgccctt 22122918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 24851340 - 24851301
Alignment:
Q  27 cctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  24851340 cctgcatatgcgggagctttagtgcaccgggttgcccttt 24851301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 39203634 - 39203672
Alignment:
Q  29 tgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  39203634 tgcatatgcgggagctttagtgcaccgggttgcccttta 39203672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 516529 - 516569
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  516529 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 516569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 10484656 - 10484616
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  10484656 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 10484616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 13628830 - 13628790
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  13628830 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 13628790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 13730638 - 13730602
Alignment:
Q  30 gcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  13730638 gcatatgcgggagctttagtgcaccgggttgcccttt 13730602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 24577952 - 24577992
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||| ||||||||||||||||||||  ||||||||    
T  24577952 ccctgcatatacgggagctctagtgcaccggattgcccttt 24577992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 24578042 - 24578082
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||| ||||||||||| ||||||||||||||| ||||||||    
T  24578042 ccctacatatgcgggaactctagtgcaccgggttgcccttt 24578082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 26292447 - 26292487
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||| ||||||||||||||| || |||||    
T  26292447 ccctgcatatgcgggaactctagtgcaccgggttgtccttt 26292487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 40272852 - 40272812
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  40272852 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 40272812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 40390358 - 40390398
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  40390358 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 40390398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 47624216 - 47624256
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  47624216 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 47624256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 54484808 - 54484848
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  54484808 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 54484848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 48735162 - 48735121
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  48735162 ccctgcatatgcgggagctctagtgcaccgggttgcccttta 48735121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 21172049 - 21172009
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  21172049 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 21172009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 32758354 - 32758394
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  32758354 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 32758394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 42391140 - 42391100
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  42391140 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 42391100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 10693113 - 10693072
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    |||||||||||||||||||||||||||| ||| |||||||||    
T  10693113 ccctgcatatgcgggagctctagtgcactgggttgcccttta 10693072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 31591146 - 31591109
Alignment:
Q  29 tgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  31591146 tgcatatgcgggagctctagtgcaccgggttgcccttt 31591109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 18747582 - 18747621
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgccctt 65  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  18747582 ccctgcgtatgcgggagctttagtgcaccgggctgccctt 18747621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 11741890 - 11741927
Alignment:
Q  28 ctgcatatgcgggagctctagtgcaccgggctgccctt 65  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  11741890 ctgcacatgcgggagctctagtgcaccgggttgccctt 11741927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 21566531 - 21566564
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggct 59  Q
    ||||||||||||||||||| ||||||||||||||    
T  21566531 ccctgcatatgcgggagctttagtgcaccgggct 21566564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 42476968 - 42477005
Alignment:
Q  28 ctgcatatgcgggagctctagtgcaccgggctgccctt 65  Q
    ||||||||||||||||||||||||||| || |||||||    
T  42476968 ctgcatatgcgggagctctagtgcaccaggttgccctt 42477005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 32233175 - 32233135
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||| |||||||  ||||||||||||||||||||    
T  32233175 ccctgcatatgagggagcttcagtgcaccgggctgcccttt 32233135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 36602542 - 36602582
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  36602542 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 36602582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 42798764 - 42798804
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||||||| ||||||| |||| ||||||||    
T  42798764 ccctgcatatgcgggagctatagtgcatcgggttgcccttt 42798804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 42805625 - 42805661
Alignment:
Q  30 gcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  42805625 gcatatgcgggagctttagtgcaccgggttgcccttt 42805661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 30672 - 30712
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  30672 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 30712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 48674 - 48634
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  48674 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 48634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 1347057 - 1347097
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  1347057 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 1347097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 1354797 - 1354757
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  1354797 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 1354757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 25557818 - 25557858
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  25557818 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 25557858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 26097253 - 26097293
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  26097253 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 26097293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 25997749 - 25997784
Alignment:
Q  31 catatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||||||||||||||| ||||||||    
T  25997749 catatgcgggagctctagtgcaccgggttgcccttt 25997784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 10734945 - 10734904
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    |||||| |||||||||||| |||| |||||||||||||||||    
T  10734945 ccctgcgtatgcgggagctttagtccaccgggctgcccttta 10734904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 12892108 - 12892144
Alignment:
Q  30 gcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  12892108 gcatatgcgggagctttagtgcaccgggttgcccttt 12892144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 29355895 - 29355855
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  29355895 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 29355855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 16028664 - 16028624
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  16028664 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 16028624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 32703517 - 32703557
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  32703517 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 32703557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 30877604 - 30877563
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  30877604 ccctgcatatgtgggagctctagtgcaccgggttgcccttta 30877563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 34154854 - 34154813
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    |||||||||||||| ||||||||||||||||| |||||||||    
T  34154854 ccctgcatatgcggtagctctagtgcaccgggttgcccttta 34154813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 35710409 - 35710446
Alignment:
Q  29 tgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  35710409 tgcatatgcgggagctctagtgcaccgggttgcccttt 35710446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 11462922 - 11462958
Alignment:
Q  28 ctgcatatgcgggagctctagtgcaccgggctgccct 64  Q
    |||||||||||||||||||||||||||||| ||||||    
T  11462922 ctgcatatgcgggagctctagtgcaccgggttgccct 11462958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 19438761 - 19438800
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgccctt 65  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  19438761 ccctgcatatgcgggagctctagtgcaccaggttgccctt 19438800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 7368491 - 7368528
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgccc 63  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  7368491 ccctgcatatgtgggagctctagtgcaccgggttgccc 7368528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 22861709 - 22861680
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccg 55  Q
    ||||||||||||||||||||||||||||||    
T  22861709 ccctgcatatgcgggagctctagtgcaccg 22861680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 1405282 - 1405322
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  1405282 ccctgcatatgcgggagctctagtacaccggattgcccttt 1405322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 10943877 - 10943845
Alignment:
Q  34 atgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||| |||||||||||||||||||||    
T  10943877 atgcgggagctttagtgcaccgggctgcccttt 10943845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 16957409 - 16957449
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  16957409 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 16957449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 38879678 - 38879718
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  38879678 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 38879718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 41014417 - 41014453
Alignment:
Q  30 gcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  41014417 gcatatgcgggagctttagtgcaccgggttgcccttt 41014453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 11054188 - 11054148
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  11054188 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 11054148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 20225077 - 20225117
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  20225077 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 20225117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 38786704 - 38786744
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  38786704 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 38786744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 54175160 - 54175200
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  54175160 ccctgcatatgcgggagctttagtgcaccgggctgcccttt 54175200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 28494247 - 28494282
Alignment:
Q  27 cctgcatatgcgggagctctagtgcaccgggctgcc 62  Q
    ||||||||||||||||||||||||||||||||||||    
T  28494247 cctgcatatgcgggagctctagtgcaccgggctgcc 28494282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 29207938 - 29207900
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgccct 64  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  29207938 ccctgcatatgcgggagctctagtgcaccgggttgccct 29207900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 23501884 - 23501924
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  23501884 ccctgcatatgcgggagctttagtgcaccgggttgcccttt 23501924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 32484328 - 32484368
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  32484328 ccctgcatatgcgggagctttagtgcaccgggttgcccttt 32484368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 39077836 - 39077800
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcc 62  Q
    |||||||||||||||||||||||||||||||| ||||    
T  39077836 ccctgcatatgcgggagctctagtgcaccgggttgcc 39077800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 8473660 - 8473621
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgccctt 65  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  8473660 ccctgcatatgcgggagctttagtgcaccgggttgccctt 8473621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 11394947 - 11394988
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    |||||| |||||||||||| |||||||||||| |||||||||    
T  11394947 ccctgcgtatgcgggagctttagtgcaccgggttgcccttta 11394988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 11404674 - 11404715
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    |||||| |||||||||||| |||||||||||| |||||||||    
T  11404674 ccctgcgtatgcgggagctttagtgcaccgggttgcccttta 11404715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 19028013 - 19028046
Alignment:
Q  33 tatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||| |||||||||||||||||||||    
T  19028013 tatgcgggagctttagtgcaccgggctgcccttt 19028046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 20225175 - 20225212
Alignment:
Q  30 gcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  20225175 gcatatgcgggagctttagtgcaccgggttgcccttta 20225212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 30690216 - 30690175
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    |||||| |||||||||||| ||||||||| ||||||||||||    
T  30690216 ccctgcgtatgcgggagctttagtgcaccaggctgcccttta 30690175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 38755948 - 38755907
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    |||||| |||||||||||| |||||||||||| |||||||||    
T  38755948 ccctgcgtatgcgggagctttagtgcaccgggttgcccttta 38755907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 40553977 - 40553936
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    |||||| |||||||||||| |||||||||||| |||||||||    
T  40553977 ccctgcgtatgcgggagctttagtgcaccgggttgcccttta 40553936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 44363170 - 44363129
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    |||||| |||||||||||| |||||||||||| |||||||||    
T  44363170 ccctgcgtatgcgggagctttagtgcaccgggttgcccttta 44363129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 48598862 - 48598825
Alignment:
Q  29 tgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  48598862 tgcatatgccggagctctagtgcaccgggttgcccttt 48598825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 9832353 - 9832313
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||| ||| ||||||||||||||| ||||||||    
T  9832353 ccctgcatatgcaggaactctagtgcaccgggttgcccttt 9832313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 16408637 - 16408601
Alignment:
Q  30 gcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  16408637 gcatatgcgggagctttagtgcaccgggttgcccttt 16408601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 20639698 - 20639658
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  20639698 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 20639658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 25629144 - 25629184
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||| |||||||||||||| |||||||||||| ||||||||    
T  25629144 ccctacatatgcgggagctttagtgcaccgggttgcccttt 25629184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 30639474 - 30639514
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||||||| |||||||| ||| ||||||||    
T  30639474 ccctgcatatgcgggagctttagtgcactgggttgcccttt 30639514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 35532087 - 35532127
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  35532087 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 35532127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 35567265 - 35567305
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| | |||||||||| |||||||||||||||||||||    
T  35567265 ccctgcgtctgcgggagctttagtgcaccgggctgcccttt 35567305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 47528570 - 47528530
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||| ||||| |||||||||||||||||||| ||||||||    
T  47528570 ccctgaatatgtgggagctctagtgcaccgggttgcccttt 47528530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 21779301 - 21779261
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  21779301 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 21779261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 23397859 - 23397900
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  23397859 ccctacatatgcgggagctctagtgcaccgggttgcccttta 23397900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 14530415 - 14530456
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    |||||| |||||||||||| |||||||||||| |||||||||    
T  14530415 ccctgcgtatgcgggagctttagtgcaccgggttgcccttta 14530456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 40416911 - 40416870
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    ||||||||||||| ||||| |||||||||||| |||||||||    
T  40416911 ccctgcatatgcgagagctttagtgcaccgggttgcccttta 40416870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 9671274 - 9671314
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  9671274 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 9671314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 10543795 - 10543835
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  10543795 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 10543835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 10546258 - 10546298
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  10546258 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 10546298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 22371207 - 22371247
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  22371207 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 22371247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 34080196 - 34080236
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||||| | |||||||||||| ||||||||    
T  34080196 ccctgcatatgcgggagttttagtgcaccgggttgcccttt 34080236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 39189540 - 39189508
Alignment:
Q  30 gcatatgcgggagctctagtgcaccgggctgcc 62  Q
    |||||||||||||||||||||||||||| ||||    
T  39189540 gcatatgcgggagctctagtgcaccgggttgcc 39189508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 44643618 - 44643658
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||  |||||||||||||||||||||    
T  44643618 ccctgcgtatgcgggagccttagtgcaccgggctgcccttt 44643658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 19414555 - 19414595
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  19414555 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 19414595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 34725138 - 34725098
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  34725138 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 34725098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 38478322 - 38478282
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  38478322 ccctgcatatgcgggagctctagtgcaccgggttgcccttt 38478282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 10378775 - 10378738
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgccc 63  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  10378775 ccctgcatatgcgggagctttagtgcaccgggctgccc 10378738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 23796583 - 23796623
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  23796583 ccctgcatatgctggagctttagtgcaccgggctgcccttt 23796623  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 35253227 - 35253187
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  35253227 ccctgcatatgcgggagctctagtgcaccggattgcccttt 35253187  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 45812577 - 45812541
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcc 62  Q
    |||||||||||||||||||||||||||||||| ||||    
T  45812577 ccctgcatatgcgggagctctagtgcaccgggttgcc 45812541  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 50606521 - 50606561
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  50606521 ccctgcatatgcgggagctttagtgcaccgggttgcccttt 50606561  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 4349756 - 4349797
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    |||||| |||||||||||| |||||||||||| |||||||||    
T  4349756 ccctgcgtatgcgggagctttagtgcaccgggttgcccttta 4349797  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 10668345 - 10668385
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  10668345 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 10668385  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 14617156 - 14617196
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||||||| |||||||||||| | ||||||    
T  14617156 ccctgcatatgcgggagctttagtgcaccgggttacccttt 14617196  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 16120834 - 16120874
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||||||| || |||||| |||||||||||    
T  16120834 ccctgcatatgcgggagctttaatgcaccaggctgcccttt 16120874  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 20004126 - 20004090
Alignment:
Q  30 gcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  20004126 gcatatgcgggagctttagtgcaccgggttgcccttt 20004090  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 20999890 - 20999850
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| || ||||||||| |||||||||||||||||||||    
T  20999890 ccctgcgtacgcgggagctttagtgcaccgggctgcccttt 20999850  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 47214627 - 47214655
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcacc 54  Q
    |||||||||||||||||||||||||||||    
T  47214627 ccctgcatatgcgggagctctagtgcacc 47214655  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 50760280 - 50760240
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| || ||||||||||||||||||    
T  50760280 ccctgcgtatgcgggagctttaatgcaccgggctgcccttt 50760240  T

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Target: scaffold0223 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 11224 - 11265
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttta 67  Q
    ||||||||||||||||||||||||||||| || |||||||||    
T  11224 ccctgcatatgcgggagctctagtgcaccaggttgcccttta 11265  T

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Target: scaffold0180 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 24173 - 24133
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  24173 ccctgcatatgcgggagctctagtgcaccggattgcccttt 24133  T

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Target: scaffold0057 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 43753 - 43793
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||||||||||||||||||||||||| | | ||||||||    
T  43753 ccctgcatatgcgggagctctagtgcactgagttgcccttt 43793  T

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Target: scaffold0057; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 46926 - 46966
Alignment:
Q  26 ccctgcatatgcgggagctctagtgcaccgggctgcccttt 66  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  46926 ccctgcgtatgcgggagctttagtgcaccgggttgcccttt 46966  T

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