View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8977_low_8 (Length: 389)
Name: NF8977_low_8
Description: NF8977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8977_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 371
Target Start/End: Original strand, 38892872 - 38893237
Alignment:
| Q |
9 |
tggtggtgtgggagtgggacaagttatgtagacattgttctaatgattatcaatcacttttttcccaaaaatttggatttttaaagattgcctttggata |
108 |
Q |
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| T |
38892872 |
tggtggtgtgggagtgggacaagttatgtagacattgttctaatgattatcaatcacttttttcccaaaaatttggatttttaaagattgcctttggata |
38892971 |
T |
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| Q |
109 |
aatgatatgattattgcgtaagggaaacaatgtcaaacgataatag---gtatgcctaagaattgtagtaaaagcttttcccgtcattatgtataatcta |
205 |
Q |
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| T |
38892972 |
aatgatatgattattgcgtaagggaaacaatgtcaaacgataatagctagtatgcctaagaattgtagtaaaagcttttcccgtcattatgtataatcta |
38893071 |
T |
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| Q |
206 |
gactgttacactagatgctacacgtatggaatttgtggtcgtgataatgaaatttttcatcctacaagccaattttgtggattaagttctcaaattctca |
305 |
Q |
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| T |
38893072 |
gattgttacactagatgctacatgtatgggatttgtggtcatgataatgatattcttcatcgtacaagtcaattttgtggattaagttcttaaattctca |
38893171 |
T |
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| Q |
306 |
catgtatcatagtgaatctaaattattgtaattaattgtgaccatctgattgagattggaccgaac |
371 |
Q |
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| T |
38893172 |
catgtatcacagtgaatctaaattattgtaattaattgtgaccatctgattgagatcggatcgaac |
38893237 |
T |
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