View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8977_low_9 (Length: 323)
Name: NF8977_low_9
Description: NF8977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8977_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 6 - 295
Target Start/End: Original strand, 40884886 - 40885175
Alignment:
| Q |
6 |
agaaacgtggagaactaactttgagagccgatatattaggggtaaaaattaagtttgatttactctgattgatcatttgcaattattatttcattttcat |
105 |
Q |
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| T |
40884886 |
agaaacgtggagaactaactttgagagccgaaatattaggggtaaaaattaagtttgatttactctgattgatcatttgcaattattatttcattttcat |
40884985 |
T |
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| Q |
106 |
taattacacccaaatattttactgccaaaaataaactcagagtcggttatcatatttctataaaatgccatcagtgtcatactctcatttcaatttcatt |
205 |
Q |
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| T |
40884986 |
taattacacccaaatattttactgccaaaaataaactcagagtcggttatcatatttctataaaatgccatcagtctcatactctcatttcaatttcatt |
40885085 |
T |
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| Q |
206 |
tgtaaattcatcactttcgtttgattctatcttttgaaatcacaatcacaatgtttttcagcaagaagcaggaaggaatcaaatcacaca |
295 |
Q |
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| T |
40885086 |
tgtaaattcatcactttcgtttgattctatcttttgaaatcacaatcacaatgtttttcagcaagaagcaggaaggaatcaaatcacaca |
40885175 |
T |
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