View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8978_high_5 (Length: 612)
Name: NF8978_high_5
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 43 - 515
Target Start/End: Complemental strand, 42760099 - 42759627
Alignment:
| Q |
43 |
tcttattccttaaagttattaggtttgcatcaagttaaccctaaagatttggagccaaattagcagcaattaatgctaatctgttaaccctaaaataatt |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42760099 |
tcttattccttaaagttattaggtttgcatcaagttaaccctaaagatttggagccaaattagcagcaattaatgctaatctgttagccctaaaataatt |
42760000 |
T |
|
| Q |
143 |
tggctccaaagtatttggctgtttgaattcaaaataatgcaattattgtggtctgcttagtttaccgtgttttatgtaaacctttagtttttcatttagt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42759999 |
tggctccaaagtatttggctgtttgaattcaaaataatgcaattattgtggtctgcttagtttaccttgttttatgtaaacctttagtttttcatttagt |
42759900 |
T |
|
| Q |
243 |
ttgtatttgtatttcaaaattccccttgcttgaatagagcacaacagtaattaagggctattgaactttcgttttgaaaactaacacatctatccatatg |
342 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
42759899 |
ttgtatttgtatttcgaaattccccttgcttgaatagagcacaacattagttaagggttattgaactttcgttttgaaaaccaacacatctatccatctg |
42759800 |
T |
|
| Q |
343 |
taatcctctttttcccatgcatattaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtttgcattttactcatctgtttcta |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42759799 |
taatcctctttttcccatgcatattaacacaatcatgcactttattccctctgtatatatatacatgcctgactgtttgcattttactcatctgtttcta |
42759700 |
T |
|
| Q |
443 |
aactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagttaatttgatggtcg |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42759699 |
aactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagttaatttgatggtcg |
42759627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 41 - 502
Target Start/End: Original strand, 1401747 - 1402208
Alignment:
| Q |
41 |
tctcttattccttaaagttattaggtttgcatcaagttaaccctaaagatttggagccaaattagcagcaattaatgctaatctgttaaccctaaaataa |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
1401747 |
tctcttattccttaaagttattaggtttgcatcaagttaaccctaaagatttggagccaaattagcagcaattaatgctaatgagttaaccttaaaataa |
1401846 |
T |
|
| Q |
141 |
tttggctccaaagtatttggctgtttgaattcaaaataatgcaattattgtggtctgcttagtttaccgtgttttatgtaaacctttagtttttcattta |
240 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1401847 |
tttggctccaaagtatttgactgtttgaattcaaaataatgcaattattgtggtctgcttagtttaccgtgttttatgtaaacctttagttttccattta |
1401946 |
T |
|
| Q |
241 |
gtttgtatttgtatttcaaaattccccttgcttgaatagagcacaacagtaattaagggctattgaactttcgttttgaaaactaacacatctatccata |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1401947 |
gtttgtatttgtatttcaaaattccccttgcttgaatacaacacaacattaatcaagggctattgaactttcgttttgaaaaccaacacatctatccata |
1402046 |
T |
|
| Q |
341 |
tgtaatcctctttttcccatgcatattaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtttgcattttactcatctgtttc |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| |
|
|
| T |
1402047 |
tgtaatcctctttttcccatgcatattaacacaatcatgcaccttattccctctgtatatatacacatgcctgactgtttccgttttactcatctgtttc |
1402146 |
T |
|
| Q |
441 |
taaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagtt |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1402147 |
taaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagtt |
1402208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 25890538 - 25890428
Alignment:
| Q |
44 |
cttattccttaaagttattaggtttgcatcaagttaaccctaaagatttggagccaaattagcagcaattaatgctaatctgttaaccctaaaataattt |
143 |
Q |
| |
|
|||| ||||||| |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
25890538 |
cttactccttaatcttattaggtt-gcaacaacttaaccctaaagatttggagccaaattagcagcaattaatgctaataagttaaccctaaaaaaattt |
25890440 |
T |
|
| Q |
144 |
ggctccaaagta |
155 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
25890439 |
ggctacaaagta |
25890428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 4814639 - 4814717
Alignment:
| Q |
77 |
ttaaccctaaagatttggagccaaattagcagcaattaatgctaatctgttaaccctaaaataatttggctccaaagta |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |
|
|
| T |
4814639 |
ttaaccctaaagatttggagccaaattagcagcaattaatgctaataagctaaccctaaaaaaatttggctccaaagta |
4814717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 37342036 - 37341958
Alignment:
| Q |
77 |
ttaaccctaaagatttggagccaaattagcagcaattaatgctaatctgttaaccctaaaataatttggctccaaagta |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
37342036 |
ttaaccctaaagatttggagccaaattagcagcaattaatgctaataagttaaccctaaaataatttggctacaaagta |
37341958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 56478983 - 56478858
Alignment:
| Q |
44 |
cttattccttaaagttattaggtttgcatcaagttaaccctaaagatttggagccaaattagcagcaattaatgctaa-tctgttaaccctaaaataatt |
142 |
Q |
| |
|
|||| ||||||| |||||||||| ||| ||| ||||||||| | |||||| ||||| | |||||| | |||||||| | | ||||||| ||| |||| |
|
|
| T |
56478983 |
cttactccttaatcttattaggtt-gcaacaacttaaccctagaaatttggctccaaaattgcagcactaaatgctaagtgagataacccttaaaaaatt |
56478885 |
T |
|
| Q |
143 |
tggctccaaagtatttggctgtttgaa |
169 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
56478884 |
tggctccaaagtatttggctgtttgaa |
56478858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 23487027 - 23487105
Alignment:
| Q |
77 |
ttaaccctaaagatttggagccaaattagcagcaattaatgctaatctgttaaccctaaaataatttggctccaaagta |
155 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
23487027 |
ttaaccctaaaaatttggagccaaattagcagcaattaatgctaataagttaaccctaaaaaaatttggcttcaaagta |
23487105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 23485516 - 23485594
Alignment:
| Q |
77 |
ttaaccctaaagatttggagccaaattagcagcaattaatgctaatctgttaaccctaaaataatttggctccaaagta |
155 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
23485516 |
ttaaccctaaaaatttcgagccgaattagcagcaattaatgctaataagttaaccctaaaaaaatttggcttcaaagta |
23485594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 11646557 - 11646513
Alignment:
| Q |
125 |
gttaaccctaaaataatttggctccaaagtatttggctgtttgaa |
169 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| |||||||| |
|
|
| T |
11646557 |
gttaaccctaaaataatttcgcctcaaagtatttggttgtttgaa |
11646513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 445625 - 445546
Alignment:
| Q |
90 |
tttggagccaaattagcagcaattaatgctaatctgttaaccctaaaataatttggctccaaagtatttggctgtttgaa |
169 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
445625 |
tttggagccaaattagcagcaattaatgccaacgagttaaccctaagaaattttggctccaaagtatttggctgtttgaa |
445546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 50717264 - 50717338
Alignment:
| Q |
81 |
ccctaaagatttggagccaaattagcagcaattaatgctaatctgttaaccctaaaataatttggctccaaagta |
155 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||| ||||||| |
|
|
| T |
50717264 |
ccctaaagatttggagccaaatcagcagcaattaatgctaataagttaaccttaaaaaaatttggctacaaagta |
50717338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 50795584 - 50795510
Alignment:
| Q |
81 |
ccctaaagatttggagccaaattagcagcaattaatgctaatctgttaaccctaaaataatttggctccaaagta |
155 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||| ||||||| |
|
|
| T |
50795584 |
ccctaaagatttggagccaaatcagcagcaattaatgctaataagttaaccttaaaaaaatttggctacaaagta |
50795510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 23260957 - 23261082
Alignment:
| Q |
44 |
cttattccttaaagttattaggtttgcatcaagttaaccctaaagatttggagccaaattagcagcaattaatgctaa-tctgttaaccctaaaataatt |
142 |
Q |
| |
|
|||| ||||||| |||||||||| ||| ||| ||||||||| | |||||| ||||| | |||||| | |||||||| | | ||||||| ||| |||| |
|
|
| T |
23260957 |
cttactccttaatcttattaggtt-gcaacaacttaaccctagaaatttggctccaaaattgcagcattaaatgctaagtgagataacccttaaaaaatt |
23261055 |
T |
|
| Q |
143 |
tggctccaaagtatttggctgtttgaa |
169 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
23261056 |
tggctccaaagtatttggctgtttgaa |
23261082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University