View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_11 (Length: 686)
Name: NF8978_low_11
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 42635321 - 42635569
Alignment:
| Q |
18 |
atatgttgcaggaatctaatattcaaggtgcttatgtggtactataccaaatttgagttcaatgacatgagaactgtaggaatagaaaagacagacatac |
117 |
Q |
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| T |
42635321 |
atatgttgcagga-tctaatattcaaggtgcttatgtggtactataccaaatttgagttcaatgacatgagaactgtaggaatagaaaagacagacatac |
42635419 |
T |
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| Q |
118 |
agcacatggcgttgtccatgtggtcctaaatgaggccgaaagtgaaaagaaattatccacctcattaacaaccacagcctgcatcaaaaatagaaataaa |
217 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42635420 |
agca--tggtgttgtccatgtggtcctaaatgaggccgaaagtgaaaagaaattatccacctcattaacaaccacagcctgcatcaaaaatagaaataaa |
42635517 |
T |
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| Q |
218 |
caaattaggaggtaaatatgataaatgaacgttcaaaaatgtgcatcacgtc |
269 |
Q |
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| T |
42635518 |
caaattaggaggtaaatatgataaatgaacgttcaaaaatgtgcatcacgtc |
42635569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 466 - 680
Target Start/End: Original strand, 42635724 - 42635938
Alignment:
| Q |
466 |
aagctcacttaccacctcctaaagattatgtagcatagacacttcatattgaaaatgcgtctggagtacttcatattgaagatgcatctggagcctgaca |
565 |
Q |
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| T |
42635724 |
aagctcacttaccacctcctaaagattatgtagcatagacacttcatactgaagatgcgtctagagcacttcatattgaagatgcgtctggagcctgaca |
42635823 |
T |
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| Q |
566 |
caagtcaggatccaacactgacacgtattgtataaaatcacttttatttttcttaaattattattatatgcggtctcctgtttctgtgcaagtgctttgt |
665 |
Q |
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| T |
42635824 |
caagtcagtatccaacactgacacatattgtataaaatcacttttatttttcttaaattattattatgtgcggtctcttgtttctgtgcaagtgctttgt |
42635923 |
T |
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| Q |
666 |
atcctataacaccat |
680 |
Q |
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| T |
42635924 |
atcctataacaccat |
42635938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 362 - 400
Target Start/End: Original strand, 42635686 - 42635724
Alignment:
| Q |
362 |
ttgaaacaatagctgttcataagtatacatacctccata |
400 |
Q |
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| T |
42635686 |
ttgaaacaatagctgttcataagtatacatacctccata |
42635724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 8e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 7229089 - 7228945
Alignment:
| Q |
66 |
aaatttgagttcaatgacatgagaactgtaggaatagaaaagacagacatacagcacatggcgttgtccatgtggtcctaaatgaggccgaaagtgaaaa |
165 |
Q |
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||||||| |||||||||| ||||||||||| ||||||||||| |||| ||||||| ||| ||||||| ||||||||||||||||||||||| ||||| |
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| T |
7229089 |
aaatttgcgttcaatgacttgagaactgtaagaatagaaaagtaagacttacagca--tggtattgtccacgtggtcctaaatgaggccgaaagagaaaa |
7228992 |
T |
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| Q |
166 |
gaaattatccacctcattaacaaccacagcctgcatcaaaaatagaaataa |
216 |
Q |
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||| ||||||||||||||||||||||||||||||| ||| | |||||| |
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| T |
7228991 |
gaa----tccacctcattaacaaccacagcctgcatcagaaaaataaataa |
7228945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 354 - 432
Target Start/End: Complemental strand, 7228671 - 7228593
Alignment:
| Q |
354 |
tgaaaagattgaaacaatagctgttcataagtatacatacctccatatttgggtgctgagacaaaagattggacaagtg |
432 |
Q |
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| T |
7228671 |
tgaaaaggttgaaacaatagatgctgataagtatacataccttcatatttgggtgctgagacaaaaggttggacaagtg |
7228593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 552 - 680
Target Start/End: Complemental strand, 7228417 - 7228292
Alignment:
| Q |
552 |
tctggagcctgacacaa-gtcaggatccaacactgacacgtattgtataaaatcacttttatttttcttaaattattattatatgcggtctcctgtttct |
650 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||| |||| | |||||||||| | ||||||||||||||||| | || || ||| || ||| |
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| T |
7228417 |
tctggagcctgacacaaagtcagtatccaacactgacac--attgcactaaatcactttca-ttttcttaaattattatca-gtgttgtgtccagtgtct |
7228322 |
T |
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| Q |
651 |
gtgcaagtgctttgtatcctataacaccat |
680 |
Q |
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| T |
7228321 |
gtgcaagtgctttgtagcctataacaccat |
7228292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 87 - 203
Target Start/End: Original strand, 49598722 - 49598832
Alignment:
| Q |
87 |
agaactgtaggaatagaaaagacagacatacagcacatggcgttgtccatgtggtcctaaatgaggccgaaagtgaaaagaaattatccacctcattaac |
186 |
Q |
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||||||||| ||||||||||| |||| ||||||| ||| |||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
49598722 |
agaactgtaagaatagaaaagtaagacttacagca--tggtactgtccacgtggtcctaaatgaggccgaaagagaaaagaa----tccacctcattaac |
49598815 |
T |
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| Q |
187 |
aaccacagcctgcatca |
203 |
Q |
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||||||||||||||||| |
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| T |
49598816 |
aaccacagcctgcatca |
49598832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 382 - 432
Target Start/End: Original strand, 49599089 - 49599139
Alignment:
| Q |
382 |
aagtatacatacctccatatttgggtgctgagacaaaagattggacaagtg |
432 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
49599089 |
aagtatacataccttcatatttgggtgctgagacaaaaggttggacaagtg |
49599139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 648 - 680
Target Start/End: Original strand, 49599386 - 49599418
Alignment:
| Q |
648 |
tctgtgcaagtgctttgtatcctataacaccat |
680 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
49599386 |
tctgtgcaagtgctttgtagcctataacaccat |
49599418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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