View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_16 (Length: 587)
Name: NF8978_low_16
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Complemental strand, 53489489 - 53488939
Alignment:
| Q |
18 |
aatatttcaatttctgcatcatgcattgcagttacgttcagaagggtcattgtgggatgaaatagactttgaattcttgggaaatttgagtggtgatcct |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53489489 |
aatatttcaatttctgcatcatgcattgcagttacgttcagaagggtcattgtgggatgaaatagactttgaattcttgggaaatttgagtggtgatcct |
53489390 |
T |
|
| Q |
118 |
tacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaacaattctatttatggtttgatccaactacaagttttcatacctattctt |
217 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
53489389 |
tacatagttcatacaaatgtgtacacccaaggcaaaggggacagagagcaacaattctatttatggtttgacccaactacaagttttcatacctattctt |
53489290 |
T |
|
| Q |
218 |
ttctctggaatcctgcacatgttgtgtaagtttcttaatttcaaaatgtttattttcaaattctttgtttagataatggaatcaactagcacatcaaata |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |||| |
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| T |
53489289 |
ttctctggaatcctgcacatgttgtgtaagtttctaaatttcaaaatgttta-tttcaaattctttgtttggataatggaatcaaatagcacatc-aata |
53489192 |
T |
|
| Q |
318 |
ttaagatagagcttatttattttaccgtttttataaatttcacaaatcttgagataataatttaaatat-aaaaagagagtggatcaaatgaaaatttta |
416 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
53489191 |
ttaagatagagcttatttattggaccgtttttataaattttaaaaatcttgagataataatttaaacataaaaaagagagtggatcaaatgaaaatttta |
53489092 |
T |
|
| Q |
417 |
aaagatttgggcaaatttcaaattttaaggaagttgagggatcaattttaaatttttgaaaatatgtagggaccaatccttaaatttgataaataaacag |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53489091 |
aaagatttgggcaaatttcaaattttaaggaagttgagggatcaattttaaatttttgaaaatatgtagggaccaatccttaaatttgataaataaacag |
53488992 |
T |
|
| Q |
517 |
agataaatatacaaaatttgaaacacataggaactatttgtgtacacaatatg |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53488991 |
agataaatatacaaaatttgaaacacataggaactatttgtgtacacaatatg |
53488939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 53492631 - 53492732
Alignment:
| Q |
70 |
tgggatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaac |
169 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||||| |
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| T |
53492631 |
tgggatgaaattgactttgaattcttgggaaatttgagtggtgatccttacatccttcataccaatgtgtttagccaaggcaaaggtgacagagagcaac |
53492730 |
T |
|
| Q |
170 |
aa |
171 |
Q |
| |
|
|| |
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|
| T |
53492731 |
aa |
53492732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 70 - 248
Target Start/End: Original strand, 53498936 - 53499114
Alignment:
| Q |
70 |
tgggatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaac |
169 |
Q |
| |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | |||||||||||| |||||||||||| |
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| T |
53498936 |
tgggatgagattgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtgtttagccaaggcaaaggtaacagagagcaac |
53499035 |
T |
|
| Q |
170 |
aattctatttatggtttgatccaactacaagttttcatacctattcttttctctggaatcctgcacatgttgtgtaagt |
248 |
Q |
| |
|
|||| || | |||||||| |||||| || |||||| || || || |||| ||||||||| || | |||||||||| |
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|
| T |
53499036 |
aattttacctttggtttgacccaactgcagattttcacacatactcaattctatggaatcctcaacgtattgtgtaagt |
53499114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 53502074 - 53502192
Alignment:
| Q |
70 |
tgggatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaac |
169 |
Q |
| |
|
|||||||| ||||||| |||||| | |||||| | |||||||| || ||||| |||| || ||||| | || |||||||||||| |||| || |||| |
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| T |
53502074 |
tgggatgagatagactatgaatttctaggaaatgtaagtggtgaaccatacatccttcacactaatgttttcagtcaaggcaaaggaaacagggaacaac |
53502173 |
T |
|
| Q |
170 |
aattctatttatggtttga |
188 |
Q |
| |
|
|||||||| |||||||||| |
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|
| T |
53502174 |
aattctatctatggtttga |
53502192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 53494978 - 53495103
Alignment:
| Q |
70 |
tgggatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaac |
169 |
Q |
| |
|
|||||||| || |||||||||||||| || ||| ||||||| || || |||| |||| |||||||||| ||||| |||||| | ||||| |||| |
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|
| T |
53494978 |
tgggatgagattgactttgaattcttagggaatgtgagtggagaaccatacactcttcacaccaatgtgttttgtcaaggaaaaggaaatagagaacaac |
53495077 |
T |
|
| Q |
170 |
aattctatttatggtttgatccaact |
195 |
Q |
| |
|
||||| || ||||||||||||||||| |
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|
| T |
53495078 |
aattccatctatggtttgatccaact |
53495103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 52590713 - 52590825
Alignment:
| Q |
73 |
gatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaacaat |
172 |
Q |
| |
|
||||||||||| |||||||| ||||| || || |||||||||||||| || |||||||| || | || | ||||| |||||| | | ||| ||||||| |
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|
| T |
52590713 |
gatgaaatagattttgaatttttgggtaacttaagtggtgatccttatattgttcatacaaacatttatgcacaagggaaaggaaataaagaacaacaat |
52590812 |
T |
|
| Q |
173 |
tctatttatggtt |
185 |
Q |
| |
|
||||||| ||||| |
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|
| T |
52590813 |
tctatttgtggtt |
52590825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 37188571 - 37188696
Alignment:
| Q |
70 |
tgggatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaac |
169 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||| || ||||| |||| |||||||||| | |||||| ||||| |||||||||||| |
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|
| T |
37188571 |
tgggatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaac |
37188670 |
T |
|
| Q |
170 |
aattctatttatggtttgatccaact |
195 |
Q |
| |
|
||||||| |||||||||| |||||| |
|
|
| T |
37188671 |
aattctacctatggtttgacccaact |
37188696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 16942130 - 16942245
Alignment:
| Q |
73 |
gatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaacaat |
172 |
Q |
| |
|
|||||||||||||||||||| | || || ||||||||||||||||| || ||||||| || || | ||| ||||| ||||| | ||||||||||||| |
|
|
| T |
16942130 |
gatgaaatagactttgaatttcttggtaacttgagtggtgatccttatattcttcatacaaacgtattcacacaagggaaagggaatagagagcaacaat |
16942229 |
T |
|
| Q |
173 |
tctatttatggtttga |
188 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
16942230 |
tctatttgtggtttga |
16942245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 17012795 - 17012910
Alignment:
| Q |
73 |
gatgaaatagactttgaattcttgggaaatttgagtggtgatccttacatagttcataccaatgtgtacacccaaggcaaaggagacagagagcaacaat |
172 |
Q |
| |
|
|||||||||||||||||||| | || || ||||||||||||||||| || ||||||| || || | ||| ||||| ||||| | ||||||||||||| |
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|
| T |
17012795 |
gatgaaatagactttgaatttcttggtaacttgagtggtgatccttatattcttcatacaaacgtattcacacaagggaaagggaatagagagcaacaat |
17012894 |
T |
|
| Q |
173 |
tctatttatggtttga |
188 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
17012895 |
tctatttgtggtttga |
17012910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 465
Target Start/End: Original strand, 6865702 - 6865764
Alignment:
| Q |
404 |
aatgaaaattttaaaagatttggg-caaatttcaaattttaaggaagttgagggatcaatttt |
465 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||||||||| ||||||| ||| ||||||| |
|
|
| T |
6865702 |
aatgagaattttaaaagatttgggccaaatttgaaattttaaaaaagttgatggaccaatttt |
6865764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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