View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_17 (Length: 576)
Name: NF8978_low_17
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 71 - 268
Target Start/End: Complemental strand, 16580039 - 16579846
Alignment:
| Q |
71 |
caaaatagccctatttgctttcatcatgttttgctttcacacaagcaaagcttaaattcacaaaccctaagaatcagttctgctaatgccttaaaatata |
170 |
Q |
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| T |
16580039 |
caaaatagccctacttgctttcatcatgttttgcattcacactagcaaagcttaaattcacaaaccctaagaatcagttctgctaatgccttaaaatata |
16579940 |
T |
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| Q |
171 |
aaaataaaatttcttagataagttttatggggaaaattctatgacaaactaatcacttatgaattaatcttttctcttctattatatgttcctttcca |
268 |
Q |
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| T |
16579939 |
aaaataaaatttcttagataagttttatggggaaaattgtatgagaaactaatcacttatg----aatcttttctattctattacattttcctttcca |
16579846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 439 - 558
Target Start/End: Complemental strand, 16579644 - 16579523
Alignment:
| Q |
439 |
cttgatcatggagaatataaacatgataatcaattca--agaaatcaattnnnnnnnnnnnnnnncccatcatcatcttttctattccaaaacacaacta |
536 |
Q |
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| T |
16579644 |
cttgatcatggagaatataaacatgataatcaattcatcagaaatcaattaaaaaacaaaaaaaacccatcatcatcttttttattccaaaacacaacta |
16579545 |
T |
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| Q |
537 |
aaaaggaaacacacagaaagtt |
558 |
Q |
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| T |
16579544 |
aaaaggaaacacacagaaagtt |
16579523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 16579818 - 16579736
Alignment:
| Q |
283 |
ctagtagtgattgatagaagaaactatatttaa---------acaaaaccagcttaaacttcatatctccaaagtcttatgaa |
356 |
Q |
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| T |
16579818 |
ctagtaatgattgatagaagaaactatatttaagcaagtccaacaaaacaagcttaaacttcatatctccaaagtcttatgaa |
16579736 |
T |
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