View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_18 (Length: 560)
Name: NF8978_low_18
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 8e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 335 - 480
Target Start/End: Original strand, 40179240 - 40179374
Alignment:
| Q |
335 |
aaaaccaatttgatttgtgaacttttctacacataacacattagtagtttcctgtcactttaggaaaaatataaaacttttctttatctctctccaagtt |
434 |
Q |
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| T |
40179240 |
aaaaccaatttgatttgtgaacttttctacacataacacattagtagtttcctatcactttaggaa-----------ttttctttatctctcaccaagtt |
40179328 |
T |
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| Q |
435 |
accataacaaaggtgaacctctattaagcaaatgcatttcaaagaa |
480 |
Q |
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| T |
40179329 |
accataacaaaggtgaacttctattaagcaaatgcatttcaaagaa |
40179374 |
T |
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Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 40178499 - 40178567
Alignment:
| Q |
54 |
aagaatgccaagaactgcaaccatacatttgtttcttcgcgatcttgtatcaatggatgagtaagagta |
122 |
Q |
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| T |
40178499 |
aagaatgccaagaactgcaaccataaatttgtttcttcgcgatcttgtatcaatggatgagtaagagta |
40178567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 41536371 - 41536327
Alignment:
| Q |
66 |
aactgcaaccatacatttgtttcttcgcgatcttgtatcaatgga |
110 |
Q |
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| T |
41536371 |
aactgcaaccatacctttctctcttcgcgatcttgtatcaatgga |
41536327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 485 - 543
Target Start/End: Complemental strand, 9162015 - 9161957
Alignment:
| Q |
485 |
aaagcattttaaatcccttaaaaaatagcattccctatctagaaggtttcgtccaaaca |
543 |
Q |
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| T |
9162015 |
aaagcattttaaatcccttaaaaaatagtgttccctgtgtagaatgtttcgtccaaaca |
9161957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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