View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_23 (Length: 457)
Name: NF8978_low_23
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 439
Target Start/End: Original strand, 9046075 - 9046498
Alignment:
| Q |
10 |
gagcagagagccaaaataaaagtattaacgccttgggtttagtttgtttatcaatttagagattttcgtattggggtaannnnnnnnnccagttataatt |
109 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||| |
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| T |
9046075 |
gagctgagagccaaaataaaagtattaacaccttgggtttagtttgtttatcaatctagggattttcgtattggggtaatttttttt-ccagtgataatt |
9046173 |
T |
|
| Q |
110 |
cagtagcaatcttagttttgcaaatgataattatgataaaaggggttgcaggcatgcattgaagcagtgctaagttcaccaccaagtttactttcaaaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9046174 |
cagtagcaatcttagttttgcaaatgataattatgataaaaggggttgcaggcacacattgaagcagtgctaagttcaccaccaagtttactttcaaaat |
9046273 |
T |
|
| Q |
210 |
tttaattttagtttgatatttgctaatagtgtatgtaattttggaaaggctttgttactctgctagcattacgtgacattatatactttattacaatgag |
309 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| || | | ||||||| ||||||||||||||||| || |
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| T |
9046274 |
tttaattttagtttgttatttgctaacggtgtatgtaattttggaaaggctttgttactttgctggcgtcatgtgacatgatatactttattacaatcag |
9046373 |
T |
|
| Q |
310 |
ttttagttttctatttagtaacttaagcactttagcagggtttaatgtagattttttgagacatctnnnnnnngtgctgatattgatttggccaaattgg |
409 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||||| |||||||| |
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| T |
9046374 |
ttttagttttctatttagtaacttaagcacttgagcagggtttaatttagattttttgagacat-----aaaagtgctgaaattgatttggacaaattgg |
9046468 |
T |
|
| Q |
410 |
atttgtaatatcttacacgttatagtattt |
439 |
Q |
| |
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|||||||||||||||||| ||||||||||| |
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| T |
9046469 |
atttgtaatatcttacacattatagtattt |
9046498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 228 - 441
Target Start/End: Original strand, 42938437 - 42938650
Alignment:
| Q |
228 |
tttgctaatagtgtatgtaattttggaaaggctttgttactctgctagcattacgtgacattatatactttattacaatgagttttagttttctatttag |
327 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42938437 |
tttgctaatagtgtatgtaattttggaaaggctttgttactttgctagcattatgtgacattatatactttattacaatgagttttagttttctatttag |
42938536 |
T |
|
| Q |
328 |
taacttaagcactttagcagggtttaatgtagattttttgagacatctnnnnnnngtgctgatattgatttggccaaattggatttgtaatatcttacac |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42938537 |
taacttaagcactttagcagggtttaatgtagattttttgagacatctaaaaaaagtgctgatattgatttggccaaattggatttgtaatatcttacac |
42938636 |
T |
|
| Q |
428 |
gttatagtatttct |
441 |
Q |
| |
|
|||||||||||||| |
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|
| T |
42938637 |
gttatagtatttct |
42938650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 42936580 - 42936791
Alignment:
| Q |
9 |
ggagcagagagccaaaataaaagtattaacgccttgggtttagtttgtttatcaatttagagattttcgtattggggtaannnnnnnnnccagttataat |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |
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| T |
42936580 |
ggagctgagagccaaaataaaagtattaacgccttgggtttagtttgtttatcaatttagagattttcgtattggagtaatttttttttccagtgataat |
42936679 |
T |
|
| Q |
109 |
tcagtagcaatcttagttttgcaaatgataattatgataaaaggggttgcaggcatgcattgaagcagtgctaagttcaccaccaagtttactttcaaaa |
208 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42936680 |
tcagtagcaatcttagttttccaaatgataattatgataaaaggggttgcaggcacacattgaagcagtgctaagttcaccaccaagtttactttcaaaa |
42936779 |
T |
|
| Q |
209 |
ttttaattttag |
220 |
Q |
| |
|
|||||||||||| |
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|
| T |
42936780 |
ttttaattttag |
42936791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 26084537 - 26084700
Alignment:
| Q |
25 |
ataaaagtattaacgccttgggtttagtttgtttatcaatttagagattttcgtattggggtaannnnnnnnncc--agttataattcagtagcaatctt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||| ||||||||||| |
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| T |
26084537 |
ataaaagtattaacgccttgggtttagtttgtttatcaatttagggattttcgtattggggtaattttttttttcctagtgataattcggtagcaatctt |
26084636 |
T |
|
| Q |
123 |
agttttgcaaatgataattatgataaaaggggttgcaggcatgcattgaagcagtgctaagttc |
186 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
26084637 |
agttttgcaaatgataattatgataaaaggggttgcaggcacacattgaagcagtgctaagttc |
26084700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 21763098 - 21763176
Alignment:
| Q |
10 |
gagcagagagccaaaataaaagtattaacgccttgggtttagtttgtttatcaatttagagattttcgtattggggtaa |
88 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||| |||||| |
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| T |
21763098 |
gagctgagagccaaaataaaagtattaaccccttgggtttagtttgtttatcaatttagggattttcatattagggtaa |
21763176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 12806870 - 12806805
Alignment:
| Q |
11 |
agcagagagccaaaataaaagtattaacgccttgggtttagtttgtttatcaatttagagattttc |
76 |
Q |
| |
|
||||||| |||||||||| ||| ||| ||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
12806870 |
agcagagcaccaaaataaaggtaacaaccccttgggtttagtttgtttatcaatctagggattttc |
12806805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 14444485 - 14444429
Alignment:
| Q |
20 |
ccaaaataaaagtattaacgccttgggtttagtttgtttatcaatttagagattttc |
76 |
Q |
| |
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|||||||||| ||| ||| ||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
14444485 |
ccaaaataaaggtaacaaccccttgggtttagtttgtttatcaatctagggattttc |
14444429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 50291256 - 50291309
Alignment:
| Q |
11 |
agcagagagccaaaataaaagtattaacgccttgggtttagtttgtttatcaat |
64 |
Q |
| |
|
|||||||| |||||||||| ||| ||| ||||| ||||||||||||||||||| |
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|
| T |
50291256 |
agcagagaaccaaaataaaggtaacaaccccttgagtttagtttgtttatcaat |
50291309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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