View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_25 (Length: 438)
Name: NF8978_low_25
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_25 |
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| [»] scaffold0562 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 25917817 - 25918206
Alignment:
| Q |
19 |
gagactttggtccctcaaaagatcttgtttcagacttgtcatttgtcaaacctaacatggcataggaaaattgataatttatttttgccgtgcaaaaaac |
118 |
Q |
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| T |
25917817 |
gagactttggtccctcaaaagatcttgtttcagacttgtcatttgtcaaacctaacatggcataggaaaattgataatttatttttgccgtgcaaaaaac |
25917916 |
T |
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| Q |
119 |
aagtagaaagagaaaatnnnnnnnnnnnnnnnnnnnnaatattaattctgaatatttttattacattacacacttcataaacaaattgtgatgattagag |
218 |
Q |
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| T |
25917917 |
aagtagaaagagaacatatcat---------------aatattaattctgaatattt--attacattacacacttcataaacaaattgtgatgattagag |
25917999 |
T |
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| Q |
219 |
cacaatcttggtgctattatgtaattaaaacattaaagtttggatctagtaggaaatgcagtggtatcaaagactttaaggaaaaaacgtgttcttggga |
318 |
Q |
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| T |
25918000 |
cacaatcttggtgctattatgtaattaaagcattaaagtttggatctagtaggaaatgcagtggtatcaaagactttaaggaaaaaacgtgttcttggga |
25918099 |
T |
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| Q |
319 |
tagaaagcttggactgcaatatagtaccaatggtagcaataagattcttcttaacttctttgtttataccacccattgatattatttcagcataagcagc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25918100 |
tagaaagcttggactgcaatatagtaccaatggtagcaataagattcttcttcacttctttgtttataccacccattgatattatttcagcataagcagc |
25918199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0562 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0562
Description:
Target: scaffold0562; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 425
Target Start/End: Complemental strand, 8915 - 8775
Alignment:
| Q |
285 |
tcaaagactttaaggaaaaaacgtgttcttgggatagaaagcttggactgcaatatagtaccaatggtagcaataagattcttcttaacttctttgttta |
384 |
Q |
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| T |
8915 |
tcaaagactttgagaaaaaatcttgttcttggtatagataggttggattccaagattgtgccaatggtactgattagattcttcttcacttctgaattaa |
8816 |
T |
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| Q |
385 |
taccacccattgatattatttcagcataagcagctggttct |
425 |
Q |
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| T |
8815 |
tgccacccattgaaactagttcaccatatgcagctggttct |
8775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 425
Target Start/End: Complemental strand, 3878079 - 3877939
Alignment:
| Q |
285 |
tcaaagactttaaggaaaaaacgtgttcttgggatagaaagcttggactgcaatatagtaccaatggtagcaataagattcttcttaacttctttgttta |
384 |
Q |
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| T |
3878079 |
tcaaagactttgagaaaaaatcttgttcttggtatagataggttggattccaagattgtgccaatggtactgattagattcttcttcacttctgaattaa |
3877980 |
T |
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| Q |
385 |
taccacccattgatattatttcagcataagcagctggttct |
425 |
Q |
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| T |
3877979 |
tgccacccattgaaactagttcaccatatgcagctggttct |
3877939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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