View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_26 (Length: 423)
Name: NF8978_low_26
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 12554824 - 12555207
Alignment:
| Q |
19 |
aatctcagaatgatccatctcatcactctgtcctaatagcaagtaacgcccatccaacgacggtgtaaacgacgacgccatcggtttcaacagcttcaac |
118 |
Q |
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| T |
12554824 |
aatctcagaatgatccatctcatcactctgtcctaatagcaagtaacgcccatccaacgacggtgtaaacgacgacgccatcggtttcaacagcttcaac |
12554923 |
T |
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| Q |
119 |
ccgtgtcgtttcaactccaactctctatcattttcaaatccaccaaaacacacaaaatgagcttaaacaacaagaaataacattttttattcattgatta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12554924 |
ccgtgtcgtttcaactccaactctctatcattttcaaatccaccaaaacacacaaaatgagcttaaacaacaagaaataacattttttattcgttgatta |
12555023 |
T |
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| Q |
219 |
tat---aagtattgttgtattccttcttgtaatcaacaattctctcatgttatttactcaaattattatcgatgttgaagtgtcgtgttcggtgtctatg |
315 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12555024 |
tataagaagtattgttgtattccttcttgtaatcaacaattctctcatgttatttactcaaattattatcgatattgaagtgtcgtgttcggtgtc---- |
12555119 |
T |
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| Q |
316 |
cttcataaatggtggtatgatcaaatgtgaatggtgcatgaagttacgtgccttatgatttgaggacggaggaggctgaggaggtagctgc |
406 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12555120 |
---cataaatagtggtatgatcaaattggaatggtgcatgaagttacgtgccttatgatttgaggacggaggaggctgaggaggtagctgc |
12555207 |
T |
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