View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8978_low_28 (Length: 421)

Name: NF8978_low_28
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8978_low_28
NF8978_low_28
[»] chr4 (14 HSPs)
chr4 (110-406)||(1171854-1172157)
chr4 (216-421)||(1164579-1164772)
chr4 (172-406)||(1181158-1181405)
chr4 (39-211)||(1148163-1148336)
chr4 (260-365)||(1148456-1148561)
chr4 (228-337)||(1137003-1137112)
chr4 (237-337)||(1141666-1141766)
chr4 (131-195)||(1164386-1164450)
chr4 (228-311)||(1145183-1145266)
chr4 (216-310)||(1160030-1160124)
chr4 (228-308)||(1133442-1133522)
chr4 (25-66)||(1180771-1180812)
chr4 (38-66)||(1133311-1133339)
chr4 (110-154)||(1164497-1164541)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 110 - 406
Target Start/End: Original strand, 1171854 - 1172157
Alignment:
Q  110 acatttacaaatgacacaaactaatcaacaagaaaacatgatattgattgtggccaaaatatatagtatttagtagcaataaagacaaagtgaggattaa 209  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| |||| || |||||||||||   |||||||||||||||||| ||| | |||||||    
T  1171854 acatttacaaatgacacaaacaaatcaacaagagaacatgatattaattgcggtcaaaatatata---tttagtagcaataaagactaagagtggattaa 1171950  T
Q  210 tg---------ataaaagcaactaaagatgaaacttaactagtggaagtgaaacaa-tgtgtctaaagccaaaagctcatacataaaatcaatgttgaaa 299  Q
    ||         |||| |||||||||| |||||||| ||||| | |||||||||||| ||||| ||||||||||| |||| ||| ||||||||||| || |    
T  1171951 tgtaggtctaaataatagcaactaaaaatgaaactaaactactagaagtgaaacaaatgtgtttaaagccaaaaactcaaacacaaaatcaatgtggaga 1172050  T
Q  300 cacaaaaatgaggcactgctgatgatgttgttgcagaattatgagtgccatcgtatccaccattgtatacaccgttgttcccaccattggcgattgtgcc 399  Q
    ||| ||||||||||  ||| ||| |||||||||||||||| |||||||||| ||| |||||||| ||| |||| |||| ||| ||||| ||||||| |||    
T  1172051 cactaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtacccaccattatatccaccattgtgcccgccattcgcgattgagcc 1172150  T
Q  400 gcctata 406  Q
     ||||||    
T  1172151 acctata 1172157  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 216 - 421
Target Start/End: Original strand, 1164579 - 1164772
Alignment:
Q  216 aagcaactaaagatgaaacttaactagtggaagtgaaacaatgtgtctaaagccaaaagctcatacataaaatcaatgttgaaacacaaaaatgaggcac 315  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |    
T  1164579 aagcaactaaagatgaaatttaacttgtggaagtgaaaccatgtgtctaaagccaaaagctcatacataaaatcaatgttgatacacaaatatgaggccc 1164678  T
Q  316 tgctgatgatgttgttgcagaattatgagtgccatcgtatccaccattgtatacaccgttgttcccaccattggcgattgtgccgcctataacaccaccg 415  Q
    | | ||| |||||| ||||||||||||||| |||| ||  |||||||||| |            || |||||||||| ||||||||||||||||||||||    
T  1164679 tcccgataatgttgatgcagaattatgagtaccattgtgcccaccattgtgt------------ccgccattggcgagtgtgccgcctataacaccaccg 1164766  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 172 - 406
Target Start/End: Original strand, 1181158 - 1181405
Alignment:
Q  172 atagtatttagtagcaataaagacaaagtgaggattaatg---------ataaaagcaactaaagatgaaacttaa---ctagtggaagtgaaacaa-tg 258  Q
    |||||||||||||||||||||||| ||| | |||||||||         |||| |||||||||| |||||||||||   ||| | ||||| |||||| ||    
T  1181158 atagtatttagtagcaataaagactaagagtggattaatgtaggtctaaataatagcaactaaaaatgaaacttaattactactagaagtaaaacaaatg 1181257  T
Q  259 tgtctaaagccaaaagctcatacataaaatcaatgttgaaacacaaaaatgaggcactgctgatgatgttgttgcagaattatgagtgccatcgtatcca 358  Q
    ||| |||||||||||||||| ||| |||||||| ||||| |||||||||||||||  ||| ||| |||||||||||||||| |||||||||| ||| |||    
T  1181258 tgtttaaagccaaaagctcaaacacaaaatcaaagttgagacacaaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtaccca 1181357  T
Q  359 ccattgtatacaccgttgttcccaccattggcgattgtgccgcctata 406  Q
    ||||| ||| |||| |||| ||| ||||||||||||| ||| ||||||    
T  1181358 ccattatatccaccattgtgcccgccattggcgattgagccacctata 1181405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 39 - 211
Target Start/End: Original strand, 1148163 - 1148336
Alignment:
Q  39 agcaacatgcaaagattcatacatctatatattcataacatactacatttccaaatggagtattatggatgacatttaca-aat------gacacaaact 131  Q
    ||||||||||||||||||| |||| ||||||||||||     |||||||||||||||   | |||||||||| ||||||| |||      ||||||||||    
T  1148163 agcaacatgcaaagattcagacatgtatatattcata-----ctacatttccaaatgatat-ttatggatgagatttacagaatacagacgacacaaact 1148256  T
Q  132 aatcaacaagaaaacatgatattgattgtggccaaaatatatagtatttagtagcaataaagacaaagtgaggattaatg 211  Q
    ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1148257 aatcaacaagaaaacatgagactaattgtggccaaaatatatagtatttagtagcaataaagacaaagtgaggattaatg 1148336  T

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Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 260 - 365
Target Start/End: Original strand, 1148456 - 1148561
Alignment:
Q  260 gtctaaagccaaaagctcatacataaaatcaatgttgaaacacaaaaatgaggcactgctgatgatgttgttgcagaattatgagtgccatcgtatccac 359  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||| ||  ||||    
T  1148456 gtctaaagccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagataatgttgttgcagaattatgagtaccattgtgcccac 1148555  T
Q  360 cattgt 365  Q
    ||||||    
T  1148556 cattgt 1148561  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 337
Target Start/End: Original strand, 1137003 - 1137112
Alignment:
Q  228 atgaaacttaactagtggaagtgaaacaatgtgtctaaagccaaaagctcatacataaaatcaatgttgaaacacaaaaatgaggcactgctgatgatgt 327  Q
    |||| ||| |||||||||||||||||||||||   |||||||||||||||| ||||||||  |||||||| ||||||| || |||| |||| ||| |||     
T  1137003 atgatactaaactagtggaagtgaaacaatgtaattaaagccaaaagctcaaacataaaagaaatgttgagacacaaacataaggccctgcagataatga 1137102  T
Q  328 tgttgcagaa 337  Q
    || |||||||    
T  1137103 tggtgcagaa 1137112  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 1141666 - 1141766
Alignment:
Q  237 aactagtggaagtgaaacaatgtgtctaaagccaaaagctcatacataaaatcaatgttgaaacacaaaaatgaggcactgctgatgatgttgttgcaga 336  Q
    ||||||||||||||||||||| ||  || | ||||||||||| ||||||||| |||||||| ||||||| || |||| |||| ||| ||| || ||||||    
T  1141666 aactagtggaagtgaaacaatatgattataaccaaaagctcaaacataaaataaatgttgagacacaaacataaggccctgcagataatgatgatgcaga 1141765  T
Q  337 a 337  Q
    |    
T  1141766 a 1141766  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 1164386 - 1164450
Alignment:
Q  131 taatcaacaagaaaac-atgatattgattgtggccaaaatatatagtatttagtagcaataaagac 195  Q
    |||||||||||||||| |||  ||| ||||||||||||||| ||||||||||||||||||||||||    
T  1164386 taatcaacaagaaaactatgg-attaattgtggccaaaatacatagtatttagtagcaataaagac 1164450  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 1145183 - 1145266
Alignment:
Q  228 atgaaacttaactagtggaagtgaaacaatgtgtctaaagccaaaagctcatacataaaatcaatgttgaaacacaaaaatgag 311  Q
    |||| |||||| || ||||||||||| ||||||  ||||||||||||||||| ||||| |  |||||||| |||| ||||||||    
T  1145183 atgatacttaattaatggaagtgaaataatgtgattaaagccaaaagctcatgcataagaaaaatgttgagacaccaaaatgag 1145266  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 1160030 - 1160124
Alignment:
Q  216 aagcaactaaagatgaaacttaactagtggaagtgaaacaatgtgtctaaagccaaaagctcatacataaaatcaatgttgaaacacaaaaatga 310  Q
    ||||||||||| |||| |||||| |||||||||| ||||||  ||  |||||| |||| |||| ||||||||| |||||||  ||||||| ||||    
T  1160030 aagcaactaaacatgatacttaattagtggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgttgggacacaaacatga 1160124  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 1133442 - 1133522
Alignment:
Q  228 atgaaacttaactagtggaagtgaaacaatgtgtctaaagccaaaagctcatacataaaatcaatgttgaaacacaaaaat 308  Q
    |||| ||||||||| |||||||||||||| ||   |||||||||||| | | ||||||||| |||||||| | ||||||||    
T  1133442 atgatacttaactactggaagtgaaacaaggtaattaaagccaaaagattacacataaaataaatgttgagaaacaaaaat 1133522  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 1180771 - 1180812
Alignment:
Q  25 tagttctttttgtcagcaacatgcaaagattcatacatctat 66  Q
    ||||||||||| |||||||||| |||||||| ||||||||||    
T  1180771 tagttctttttctcagcaacatacaaagattaatacatctat 1180812  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 1133311 - 1133339
Alignment:
Q  38 cagcaacatgcaaagattcatacatctat 66  Q
    |||||||||||||||||||||||||||||    
T  1133311 cagcaacatgcaaagattcatacatctat 1133339  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 1164497 - 1164541
Alignment:
Q  110 acatttacaaatgacacaaactaatcaacaagaaaacatgatatt 154  Q
    |||||| ||||||| | ||||||||||| ||||||||||||||||    
T  1164497 acatttccaaatgatataaactaatcaataagaaaacatgatatt 1164541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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