View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_32 (Length: 404)
Name: NF8978_low_32
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 6e-87; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 53 - 363
Target Start/End: Complemental strand, 8361812 - 8361502
Alignment:
| Q |
53 |
atatgggtggaaattgctaacaaggtgtttgtttgaaacaatgtcttagagagagaga----tgtgaattgaataatcannnnnnn-cctgtttgaattt |
147 |
Q |
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| T |
8361812 |
atatgggtggaaattgctcaccaggtgtttttttgaaacaatgtcttagagagagagagaaatgtgaattgaataatcattttttttcctgtttgaattt |
8361713 |
T |
|
| Q |
148 |
ttggcataatatatcagctctgaacctattttgatttaattgtcatgaaggctgaaacaatcactgtttttattgtcattttatagctagggataaggct |
247 |
Q |
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| T |
8361712 |
ttggcataatatatctgctctgaacctattttgattcaattttcattatggctaaaacaatcactgattttattgtcatttcatagctagggataaggct |
8361613 |
T |
|
| Q |
248 |
tagtctaggagtatatatatagtgctgatcgcaactttgtgcttgggttg--tgttttgaaccaactacttcatctttccattgccctactctaaacaag |
345 |
Q |
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| T |
8361612 |
tagtctaggagtatatatataatgctgatcgcaaccttgtgcttgggttgttttttttgaacc-------tcatctttccattgtcctactctcaacaag |
8361520 |
T |
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| Q |
346 |
acacttgggaatggtgtg |
363 |
Q |
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| T |
8361519 |
tcaattgggaatggtgtg |
8361502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 8411589 - 8411440
Alignment:
| Q |
11 |
tttggtgttcaacactcgcttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgtttgtttgaaacaatgtcttagagaga--ga |
108 |
Q |
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| T |
8411589 |
tttggtgttcaacactcccttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgtttgtttgaaacaatgtcttagagagagaga |
8411490 |
T |
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| Q |
109 |
gatgtgaattgaataatcannnnnnncctgtttgaatttttggcataata |
158 |
Q |
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| T |
8411489 |
gatgtgaattgaataatcatgtttttcctgtttgaatttttggcataata |
8411440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 75 - 212
Target Start/End: Complemental strand, 8415197 - 8415057
Alignment:
| Q |
75 |
aggtgtttgtttgaaacaatgtcttagagagagagatgtgaattgaataatcannnnnnncctgtttgaatttttggc---ataatatatcagctctgaa |
171 |
Q |
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| T |
8415197 |
aggtgtttgtttgaaacaatgtcttaaagagagagatatgaattgcataatcatgtttttcctgtttgaatttatggcataataatatatctgctctgaa |
8415098 |
T |
|
| Q |
172 |
cctattttgatttaattgtcatgaaggctgaaacaatcact |
212 |
Q |
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| T |
8415097 |
cctatttagattcgattttcatgatggctgaaacaatcact |
8415057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 262 - 388
Target Start/End: Complemental strand, 8410870 - 8410744
Alignment:
| Q |
262 |
atatatagtgctgatcgcaactttgtgcttgggttgtgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtg |
361 |
Q |
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| T |
8410870 |
atatatcgtgctaatcgcaaatttctgcttgaattgttttttgaaccatttactgcacctttccattgtcctactctcaaccagacaattgggaatggtg |
8410771 |
T |
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| Q |
362 |
tgaaattcctcaatcaccacctttctg |
388 |
Q |
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| T |
8410770 |
tgaaattcctcaatctccacctttctg |
8410744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 8350306 - 8350224
Alignment:
| Q |
144 |
atttttggcataatatatcagctctgaacctattttgatttaattgtcatgaaggctgaaacaatcactgtttttattgtcat |
226 |
Q |
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|||| |||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||| |
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| T |
8350306 |
atttatggcataatagatctgctctgaacctatttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcat |
8350224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 8480807 - 8480889
Alignment:
| Q |
144 |
atttttggcataatatatcagctctgaacctattttgatttaattgtcatgaaggctgaaacaatcactgtttttattgtcat |
226 |
Q |
| |
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|||| |||||||||| ||| |||||||||| ||| ||||||||| |||||||||||||| ||||||||||||| ||||||| |
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| T |
8480807 |
atttatggcataataaatctactctgaacctgtttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcat |
8480889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 8355159 - 8355090
Alignment:
| Q |
318 |
atctttccattgccctactctaaacaagacacttgggaatggtgtgaaattcctcaatcaccacctttct |
387 |
Q |
| |
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| T |
8355159 |
atctttccattttcctactctcaagaagacaattgggaatgatgtgaaattcctcaatcgccacctttct |
8355090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 329
Target Start/End: Complemental strand, 8415050 - 8414996
Alignment:
| Q |
275 |
atcgcaactttgtgcttgggttgtgttttgaaccaactacttcatctttccattg |
329 |
Q |
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| T |
8415050 |
atcgcaactttgtgcttgagttgtttcttgaaccatttacttcatctttccattg |
8414996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 8349134 - 8349025
Alignment:
| Q |
278 |
gcaactttgtgcttgggttgtgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtgtgaaattcctcaatca |
377 |
Q |
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| T |
8349134 |
gcaaatttgtggttgagttgtttttagaaccatttactgcatctttccgttgtccaactctcaacaaatcaattggaaatgatgtgaaattcctcaattg |
8349035 |
T |
|
| Q |
378 |
ccacctttct |
387 |
Q |
| |
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| T |
8349034 |
ccacctttct |
8349025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 388
Target Start/End: Original strand, 51650242 - 51650350
Alignment:
| Q |
280 |
aactttgtgcttgggttgtgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtgtgaaattcctcaatcacc |
379 |
Q |
| |
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||||||||||||| |||| ||||||||| |||| ||||||||| | | |||||||| |||||| || |||| ||||||||| ||||||| |||| || |
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| T |
51650242 |
aactttgtgcttgagttggactttgaaccatttactgcatctttccctcgtcctactctcaacaagtcaattggaaatggtgtgcaattccttaatcgcc |
51650341 |
T |
|
| Q |
380 |
acctttctg |
388 |
Q |
| |
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||||||||| |
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| T |
51650342 |
acctttctg |
51650350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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