View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_35 (Length: 390)
Name: NF8978_low_35
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 30792324 - 30792700
Alignment:
| Q |
1 |
agtacaagtccgggagaatgcaaaaacttttcgtataggagattgaattattgcgttagcaaaacaaat-----gtgcattatatgttatgttcatatat |
95 |
Q |
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| T |
30792324 |
agtacaagtccgggagaatgcaaaaaaatttcgtataggagattgagttattgcgttagcaaaacaaattaaatgtgcattatatgttatgttcatatat |
30792423 |
T |
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| Q |
96 |
tacaaaagttgtcatttatttattgtactagaactttgtagttgatcaccatttcttattttttataaccgaagaattcagtggaacaatactatttagc |
195 |
Q |
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| T |
30792424 |
tacaaaagttgtcatttatttattgtactagaactttgtagttgatcaccatttcttattttttataactgaagaattcagtggaacaatactatttagc |
30792523 |
T |
|
| Q |
196 |
gaacagggtgctcaatccttttgatgggtgattcgattatcacatctttgccaacaaaaaactaacaacaattcatcttccttaacctggatctccattt |
295 |
Q |
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| T |
30792524 |
gaacagggtgctcaatccttttgatgggtgattcgattatcacatctttgccaacaaaaaactaacaacaattcatcttccttaacctggatctccattt |
30792623 |
T |
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| Q |
296 |
ggaaacaaatgaccccttggttagggaccttttagttaggtgaatgattatataaagatttattgcaaggttatact |
372 |
Q |
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| T |
30792624 |
ggaaacaaatgaccccttggttagggaccttttagttaggtgaatgattatataaagatttattgcaaggttatact |
30792700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 30801834 - 30801948
Alignment:
| Q |
15 |
agaatgcaaaaacttttcgtataggagattgaattattgcgttagcaaaacaaatgtgcattatatgttatgttcatatattacaaaagttgtcatttat |
114 |
Q |
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| T |
30801834 |
agaatgcaaaaacttttggtataggagattgactcattctgttagcaaaacaaatttgcattatatgttatgctcgaatattacaagagttgtcatttat |
30801933 |
T |
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| Q |
115 |
ttattgtactagaac |
129 |
Q |
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| T |
30801934 |
ttattctactagaac |
30801948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 30802077 - 30802184
Alignment:
| Q |
128 |
actttgtagttgatcaccatttcttattttttataaccgaagaattcagtggaacaatactatttagcgaacagggtgctcaatccttttgatgggtgat |
227 |
Q |
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| T |
30802077 |
actttgtagtagatcaccctttattattttttataagagcagaatttagtggaacgatactctttagtgaaca-tgtgctcaatccttttgatgggtgat |
30802175 |
T |
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| Q |
228 |
tcgattatc |
236 |
Q |
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| T |
30802176 |
aggattatc |
30802184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 30799227 - 30799290
Alignment:
| Q |
66 |
aaatgtgcattatatgttatgttcatatattacaaaagttgtcatttatttattgtactagaac |
129 |
Q |
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| T |
30799227 |
aaatgtgcattatatgttatgttcgaatattacaagtgttgtcatttatttattgtattagaac |
30799290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 30809578 - 30809663
Alignment:
| Q |
34 |
tataggagattgaattattgcgttagcaaaacaaatgtgcattatatgttatgttcatatattacaaaagttgtcatttatttatt |
119 |
Q |
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| T |
30809578 |
tataggagaatgagttatcatgttagcaaagcaaatatgcaatacatgttatgttcgaatatcacaagagttgtcatttatttatt |
30809663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 30805743 - 30805807
Alignment:
| Q |
66 |
aaatgtgcattatatgttatgttcatatattacaaaagttgtcatttatt-tattgtactagaac |
129 |
Q |
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| T |
30805743 |
aaatgtgcattatatgttatgttcgaatattacaagaggtgtcattttttctattttactagaac |
30805807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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