View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8978_low_37 (Length: 378)
Name: NF8978_low_37
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 1204910 - 1205072
Alignment:
| Q |
17 |
aaaaatagagggtggtgtataactgaatttcataggattttgagaagaatgcctttgaggtatagttatggtaaggttgttgattccattggtgaacaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1204910 |
aaaaatagagggtggtgtataactgaatttcataggattttgggaagaatgcctttgaggtatagttatggtaaggttgttgattccattggtgaacaag |
1205009 |
T |
|
| Q |
117 |
gattgtgtcgcaaaggtggtagattggtgttttgtgatcaatgaaagaaactgtgtggctcaa |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1205010 |
gattgtgtcgcaaaggtggtagattggtgttttgtgatcaatgaaagaaactgcgtggctcaa |
1205072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 230 - 363
Target Start/End: Original strand, 1205192 - 1205322
Alignment:
| Q |
230 |
taacaaatttatatatgtacacttttctcattctccccaaaagagcatcctagttttacaagacttcttgtcaacaaaaataggtagttcataaggcttt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1205192 |
taacaaatttatatatgtacacttttctcattctcctcaaaagagcatcctagttttacaagactt---gtcaacaaaaataggtagttcataaggcttt |
1205288 |
T |
|
| Q |
330 |
aaatttagttgctcaaacattcttccgaaaccat |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1205289 |
aaatttagttgctcaaacattcttccgaaaccat |
1205322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 1205086 - 1205118
Alignment:
| Q |
191 |
ttgttacaatttccgtgtaatattattacataa |
223 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
1205086 |
ttgttacaatttgcgtgtaatattattacataa |
1205118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University