View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_4 (Length: 827)
Name: NF8978_low_4
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 15 - 442
Target Start/End: Complemental strand, 6898856 - 6898421
Alignment:
| Q |
15 |
caattgtggttaacattgtctttctatccgaatctgttatcacaacttttgcgttgatgtactaacaacaatctaatacaaagtgtccatgtccttccaa |
114 |
Q |
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| T |
6898856 |
caattgtggttaacattgtctttctatccgaatctgttatctcaacttttgcattgatgtactaacaacaatctaatacaaagtgtccatgtccttccaa |
6898757 |
T |
|
| Q |
115 |
gcaaatgtaatgacagaattggtgactattagaattacaagcaaatttcattgtgtccaagcaactatcatgacagaattggttattagcatgtttgcgg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6898756 |
gcaaatgtaatgacagaattggtgactattagaattacaagcaaatttcattgtgtccaagcaactgtcatgacagaattggttattagcatgtttgcgg |
6898657 |
T |
|
| Q |
215 |
aagcatggagatgagtttggaaaacaagattagagtcatggaaatgtaaatagcaggagtgatctcatgaac------atttactaagatgtttgtgagg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6898656 |
aagcatggagatgagtttggaaaacaagattagagtcatggaaatgtaaatagcaggagtgatctcatgaacaaggagatttactaagatgtttgtgagg |
6898557 |
T |
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| Q |
309 |
-nnnnnnngaatagaagtagaaccaaaacaacaaatc-tttaatagtttctattataagccgttgatctatcattaaacaaatgaagggctaagattgtt |
406 |
Q |
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| T |
6898556 |
aaaaaaaagaatagaagtagaaccaaaacgacaaatcatttaatagtttctattataagccgttgatttatcattaaacaaatgaagggctaagattgtt |
6898457 |
T |
|
| Q |
407 |
cactggagaaaatctcacaggagacaatcctctccc |
442 |
Q |
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| T |
6898456 |
cactggagaaaatctcacgggagacaatcctctccc |
6898421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 659 - 811
Target Start/End: Complemental strand, 19180595 - 19180435
Alignment:
| Q |
659 |
atgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataattcttttgtcacttt--------cactgaactaagcttaat |
750 |
Q |
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| T |
19180595 |
atgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataatttttttgtcactttggcactttcactgaactaagcttaat |
19180496 |
T |
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| Q |
751 |
gactcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaac |
811 |
Q |
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| T |
19180495 |
gactcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaac |
19180435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 6899118 - 6899171
Alignment:
| Q |
365 |
gccgttgatctatcattaaacaaatgaagggctaagattgttcactggagaaaa |
418 |
Q |
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| T |
6899118 |
gccgttgatctatcattaaacaaatgaagggctaagattgttcactggagaaaa |
6899171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 494 - 662
Target Start/End: Original strand, 25968284 - 25968454
Alignment:
| Q |
494 |
ttgtcaattgtcttcactcttgctgtt-atatggtcaccattttcgatgctcttctccaagcaaacatcttggtcgttgaaattctcagactcgttatca |
592 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25968284 |
ttgtcaattgtcttcactcttgctgttgatatggtcaccattttcgatgctcttctccaagcaaacatcttggtcgttgaaattctcagactcgttatca |
25968383 |
T |
|
| Q |
593 |
ccagtgccaatt-cccccggcctccaagcatacaacacgctgcctcaagtcacccaattccctttccatga |
662 |
Q |
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| T |
25968384 |
ccagcgccaattccccccggtctcaaagcatacaacacgctgcctcaagtcacccaattccctttccatga |
25968454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 527 - 662
Target Start/End: Original strand, 25990387 - 25990522
Alignment:
| Q |
527 |
tcaccattttcgatgctcttctccaagcaaacatcttggtcgttgaaattctcagactcgttatcaccagtgccaattcccccggcctccaagcatacaa |
626 |
Q |
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||||||||| ||| |||||||||| ||||||||||| | ||||||||||||||||||| |||||||| |||| ||||| ||| |||||||||||||| |
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| T |
25990387 |
tcaccatttccgacgctcttctccgagcaaacatctatgccgttgaaattctcagactcacgatcaccagcgccatttccctcggtctccaagcatacaa |
25990486 |
T |
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| Q |
627 |
cacgctgcctcaagtcacccaattccctttccatga |
662 |
Q |
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||||||||||||| |||| ||||||||||||||||| |
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| T |
25990487 |
cacgctgcctcaaatcactcaattccctttccatga |
25990522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 659 - 811
Target Start/End: Complemental strand, 1480791 - 1480631
Alignment:
| Q |
659 |
atgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataattcttttgtcacttt--------cactgaactaagcttaat |
750 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
1480791 |
atgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataatttttttgtcactttggcactttcactgaactaagcttaat |
1480692 |
T |
|
| Q |
751 |
gactcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaac |
811 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1480691 |
gactcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaac |
1480631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 659 - 766
Target Start/End: Original strand, 42801403 - 42801519
Alignment:
| Q |
659 |
atgaaaataaaccttaggtcttatattagtttaattaatta-atgatattaatataataattcttttgt--------cactttcactgaactaagcttaa |
749 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| |||| ||||||| |
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| T |
42801403 |
atgaaaataaaccttaggtcttatattagtttaattaattatattatattaatataataattcttttgtcactttggcactttcactaaactgagcttaa |
42801502 |
T |
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| Q |
750 |
tgactcagatgttcact |
766 |
Q |
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| T |
42801503 |
tgactcagatgttcact |
42801519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 29903816 - 29903764
Alignment:
| Q |
366 |
ccgttgatctatcattaaacaaatgaagggctaagattgttcactggagaaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| || |||||||| |
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|
| T |
29903816 |
ccgttgatctatcattaaacaaatgaagggctaatattgttgaccggagaaaa |
29903764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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