View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_40 (Length: 372)
Name: NF8978_low_40
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 54592314 - 54592670
Alignment:
| Q |
1 |
atgtgaataaatataccaaatt-catctgctatctagacttgtgatattactatttaaaatatgtattggtacttttcatatgatttcaaaattatgca- |
98 |
Q |
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| T |
54592314 |
atgtgaatacatataccaaatttcatctgctatctagacttgtgatattactatttaaaatatgtattggtacttttaatatgatttcaaaattatgcat |
54592413 |
T |
|
| Q |
99 |
-atcgggtagaatttcattgctatacattgatagtgtaannnnnnnnacacatgtcgaatcatatatttctgttgttttctttaatcacttctgctgtaa |
197 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54592414 |
aatcaggtagaatttcattgctatacattgatagtgtaattttttttacacatgtcgaatcatatatttctgttgttttctttaatcacttctgctgtaa |
54592513 |
T |
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| Q |
198 |
aatttccaatcaagctacaagttaacnnnnnnnaaataacctccaagtaagttgatctttataaatataagtttcaccttaatattaaaaagatctatgg |
297 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54592514 |
aatttccgatcaagctacaagttaactttttttaaataacctccaagtaagttgatctttataaatataagtttcaccttaatattaaaaagatctatgg |
54592613 |
T |
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| Q |
298 |
ttatgttgtatattaattcagataactagagaaagtcacatcccatgaatttccaac |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54592614 |
ttatgttgtatattaattcagataactagagaaagtcacatcccatgaatttccaac |
54592670 |
T |
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