View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_41 (Length: 371)
Name: NF8978_low_41
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 24750381 - 24750108
Alignment:
| Q |
1 |
aatataagtccaagtgatgatatcttcacaaattgtacccttgatctcactgtttgcaatggcaccaccttcatccatgatattgcaatgtaacttaaca |
100 |
Q |
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| T |
24750381 |
aatataagtccaagtgatgatatcttcacaaattgtacccttgatctcactgtttgcaatggcaccaccttcatccatgatattgcaatgtaacttaaca |
24750282 |
T |
|
| Q |
101 |
ttgaacatgccatcatgtgacatagtgttaagaatattgggtacttgaaaccatagttgcttaaaaggtacttgtttaatagtaatacaccaatgtttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24750281 |
ttgaacatgccatcatgtgacatagtgttaagaatattgggtacttgaaaccatagttgcttaaaaggtacttgtttaatagtaatacaccaatgtttga |
24750182 |
T |
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| Q |
201 |
tgcataccaaaaacttatcaaactaacggtgaatagttttccagatattggtggcattgtaactagttaattga |
274 |
Q |
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| T |
24750181 |
tgcataccaaaaacttatcaaactaacggtgaatagttttccagatattggtggcattgtaactagttaattga |
24750108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 31330303 - 31330236
Alignment:
| Q |
142 |
tacttgaaaccatagttgcttaaaaggtacttgtttaatagtaatacaccaatgtttgatgcatacca |
209 |
Q |
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||||||||||||||||||||||| | |||||||| ||||| | ||||||||||| |||| |||||| |
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| T |
31330303 |
tacttgaaaccatagttgcttaacaaatacttgttcaatagaagaacaccaatgttggatgaatacca |
31330236 |
T |
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