View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_42 (Length: 358)
Name: NF8978_low_42
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 49271669 - 49271999
Alignment:
| Q |
10 |
aggagcacagagaacaccaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaattttgaacttgctaaca |
109 |
Q |
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| T |
49271669 |
aggagcacaaagaacaccaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaatcttgaacttgctaaca |
49271768 |
T |
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| Q |
110 |
agatccccagctgtaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttttggttcattgcaaggactacccagaatag |
209 |
Q |
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| T |
49271769 |
agatccccagctgcaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttttggttcattgcaaggactacccagaatag |
49271868 |
T |
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| Q |
210 |
gaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatc |
309 |
Q |
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| T |
49271869 |
gaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatc |
49271968 |
T |
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| Q |
310 |
aagagggcatgttttgtttcttgtatgtcct |
340 |
Q |
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| T |
49271969 |
aagagggcatgttttgtttcttgtgtgtcct |
49271999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 49277586 - 49277922
Alignment:
| Q |
10 |
aggagcacagagaacaccaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaattttgaacttgctaaca |
109 |
Q |
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| T |
49277586 |
aggagcacaaagagtaccaggaacagaaggacagtacagaaagctataaatctcataagcatgttctccctcaagcctctcaatcttaaactggctaaaa |
49277685 |
T |
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| Q |
110 |
agatccccagctgtaccaccagtgctcacaaaccaaaac------ccagacccaacctttaaaagcctccacacttttggttcattgcaaggactaccca |
203 |
Q |
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| T |
49277686 |
aggttcccaggaaaaccaccggtgctcacaaaccaaaacctagctctagttccctcttttgaaatcttccacacttttctctcactgcaaggactaccca |
49277785 |
T |
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| Q |
204 |
gaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggat |
303 |
Q |
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| T |
49277786 |
atattggaatctcaacggtgagatcagtgagagttggaatgtaatcatgttcatattcatagaaataaactggcgagccaatggcttcagggttacggat |
49277885 |
T |
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| Q |
304 |
tacatcaagagggcatgttttgtttcttgtatgtcct |
340 |
Q |
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| T |
49277886 |
aacatcaagagggcatgttttgtttcttgtttgtcct |
49277922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 333
Target Start/End: Original strand, 49269292 - 49269544
Alignment:
| Q |
81 |
caagcctctcaattttgaacttgctaacaagatccccagctgtaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttt |
180 |
Q |
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||||| ||||||| |||||||| ||||||| |||||||||| |||||||||||||| |||||| |||||||| || | ||| ||||| || ||||||| |
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| T |
49269292 |
caagcttctcaatcttgaacttactaacaacatccccagctacaccaccagtgctcaaaaaccagaacccagatccctcttttgaaagcttcaacacttt |
49269391 |
T |
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| Q |
181 |
tggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtg |
280 |
Q |
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|| | ||||| | ||||| | || |||| | ||||| || ||||| |||||||||||| | || ||||| ||||||||| ||||| || | | |
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| T |
49269392 |
tgactggttgcatgaactactcctaaatcgaattttaatggaaagatcagtttgagttggaatgtgtttaaaacctggtgcagagaagtacactggcgag |
49269491 |
T |
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| Q |
281 |
ccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgt |
333 |
Q |
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| T |
49269492 |
ccgagttctttagggttacgaattacatcaagaggacatgttttgtttcttgt |
49269544 |
T |
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