View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_44 (Length: 349)
Name: NF8978_low_44
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 34305991 - 34306173
Alignment:
| Q |
14 |
agaagaaatatcatcacataat--cccgaagatcagaataacaactttctatgacatattaggaaccacctcgtctcagataccaacatagcgccttctt |
111 |
Q |
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| T |
34305991 |
agaagaaatatcatcatataatgacccgaagatcagaataacaaccttctatgacgtattaggaaccacctcgtctcagataccaacatagcgccttctt |
34306090 |
T |
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| Q |
112 |
tatccaccgcctcaaaacataaccaacttttagatagttaccttcctacttatgtcttaagtcgtagttttatctattatagt |
194 |
Q |
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| T |
34306091 |
tatccaccgcctcaaaacataaccaacttttagatagctaccttcctacttatgtcttaagttgtagttttatctattatagt |
34306173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 34301332 - 34301511
Alignment:
| Q |
17 |
agaaatatcatcacataat--cccgaagatcagaataacaactttctatgacatattaggaaccacctcgtctcagataccaacatagcgccttctttat |
114 |
Q |
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||||||||| ||||||||| ||| ||||||| ||||||||| || || |||| ||||||||||||||| ||||||||||||||||||||||| ||| | |
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| T |
34301332 |
agaaatatcgtcacataatgacccaaagatcaaaataacaaccttttacgacaaattaggaaccacctcttctcagataccaacatagcgcctacttatt |
34301431 |
T |
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| Q |
115 |
ccaccgcctcaaaacataaccaacttttagatagttaccttcctacttatgtcttaagtcgtagttttatctattatagt |
194 |
Q |
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| T |
34301432 |
ccaccgtctcaaaacataaccaactttttgatagctatcttcctacttatgtcttaagccctagttttatatagtatagt |
34301511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 34306246 - 34306314
Alignment:
| Q |
267 |
gtttgtttgcttcacatagataattttgctttcccttatcttattatttttctttcttttgtatcattt |
335 |
Q |
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| T |
34306246 |
gtttgtttgcttcacatagataattttgctttcccttatcttattatttttctttcttttgtatcattt |
34306314 |
T |
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