View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8978_low_45 (Length: 319)

Name: NF8978_low_45
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8978_low_45
NF8978_low_45
[»] chr1 (1 HSPs)
chr1 (48-180)||(36676037-36676172)
[»] chr8 (4 HSPs)
chr8 (218-319)||(6579297-6579398)
chr8 (218-319)||(27268086-27268187)
chr8 (218-319)||(12664010-12664111)
chr8 (219-319)||(27005048-27005147)
[»] chr4 (4 HSPs)
chr4 (218-319)||(29710944-29711045)
chr4 (218-319)||(1690225-1690329)
chr4 (219-319)||(35536096-35536195)
chr4 (1-50)||(28563915-28563964)
[»] chr6 (1 HSPs)
chr6 (233-314)||(16484252-16484333)
[»] chr5 (1 HSPs)
chr5 (233-314)||(21818577-21818658)
[»] scaffold0194 (1 HSPs)
scaffold0194 (132-165)||(26548-26581)
[»] chr7 (1 HSPs)
chr7 (87-168)||(46922039-46922120)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 48 - 180
Target Start/End: Original strand, 36676037 - 36676172
Alignment:
Q  48 gatccaccagcatcatcagatttcacctctc---ctttcctaacaccaacaaaatgaaacttgtgctcaagctctttgacaaagttaatagcccctccaa 144  Q
    ||||||||||| ||||||||||||||| |||   ||||| || |||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  36676037 gatccaccagcttcatcagatttcaccactctttctttcttagcaccaagaaaatgaaacttgtgctcaagctctttaacaaagttaatagctcctccaa 36676136  T
Q  145 ttatagaagcttgatcaccctgcattcaccaacaac 180  Q
    ||||||||||||||||||||||||||||||||||||    
T  36676137 ttatagaagcttgatcaccctgcattcaccaacaac 36676172  T

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Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 6579297 - 6579398
Alignment:
Q  218 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 317  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  6579297 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaatcacaaaattcacaatc 6579396  T
Q  318 ac 319  Q
    ||    
T  6579397 ac 6579398  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 27268187 - 27268086
Alignment:
Q  218 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 317  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  27268187 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaatcacaaaattcacaatc 27268088  T
Q  318 ac 319  Q
    ||    
T  27268087 ac 27268086  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 12664010 - 12664111
Alignment:
Q  218 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 317  Q
    |||||||||||||  |||||| ||||||||||||| |||||||| ||| |||||||| | ||||||||  |||||||||||||||  |||||||||||||    
T  12664010 aggcaaaatccaaagtatatttagaaatgcacatgtagcaaacagaatctgattgaaacgttggttcatgacacaaaacacaatcgaaaaattcacaatc 12664109  T
Q  318 ac 319  Q
    ||    
T  12664110 ac 12664111  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 319
Target Start/End: Original strand, 27005048 - 27005147
Alignment:
Q  219 ggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatca 318  Q
    ||||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||  ||||||||  |||| |||||||||||||||| |||||||||    
T  27005048 ggcaaaacccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagtgttggttcatgacac-aaacacaatcacaaaaatcacaatca 27005146  T

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Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 29710944 - 29711045
Alignment:
Q  218 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 317  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  29710944 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaatcacaaaattcacaatc 29711043  T
Q  318 ac 319  Q
    ||    
T  29711044 ac 29711045  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 1690329 - 1690225
Alignment:
Q  218 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaa---aacacaatcacaaaattcaca 314  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||| ||||  ||||||   |||| || |||||||||||||    
T  1690329 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttgattcatgacacaaaacaacagaaccacaaaattcaca 1690230  T
Q  315 atcac 319  Q
    |||||    
T  1690229 atcac 1690225  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 219 - 319
Target Start/End: Complemental strand, 35536195 - 35536096
Alignment:
Q  219 ggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatca 318  Q
    ||||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||   |||||||  |||| |||||||||||||||| |||||||||    
T  35536195 ggcaaaacccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagtgatggttcatgacac-aaacacaatcacaaaaatcacaatca 35536097  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28563915 - 28563964
Alignment:
Q  1 acctctccgcaatcttggaagaaattttctctaaaaaatttcagttagat 50  Q
    ||||||||||| ||||||||||| |||||||| || ||||||||||||||    
T  28563915 acctctccgcagtcttggaagaacttttctctgaataatttcagttagat 28563964  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 16484333 - 16484252
Alignment:
Q  233 tatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcaca 314  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||| |||||||||||||    
T  16484333 tatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaaccacaaaattcaca 16484252  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 233 - 314
Target Start/End: Original strand, 21818577 - 21818658
Alignment:
Q  233 tatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcaca 314  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||| |||||||||||||    
T  21818577 tatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaaccacaaaattcaca 21818658  T

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Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 26581 - 26548
Alignment:
Q  132 atagcccctccaattatagaagcttgatcaccct 165  Q
    ||||||||||||||||||||||||||||||||||    
T  26581 atagcccctccaattatagaagcttgatcaccct 26548  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 46922120 - 46922039
Alignment:
Q  87 acaccaacaaaatgaaacttgtgctcaagctctttgacaaagttaatagcccctccaattatagaagcttgatcaccctgca 168  Q
    ||||||| ||| || | ||| ||||||||||  || |||||||||||||| || ||||| || || ||||||||||||||||    
T  46922120 acaccaagaaattgtagcttctgctcaagcttcttaacaaagttaatagcacccccaataattgatgcttgatcaccctgca 46922039  T

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