View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8978_low_49 (Length: 305)
Name: NF8978_low_49
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_49 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 42522457 - 42522188
Alignment:
| Q |
13 |
ataattctaggagcaataatataaaaactgaaggaaacttactacaagcattgtaagtaatgatccaatcaaggacatcaccaaacctgcaaagaataat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42522457 |
ataattctaggagcaataatataaaaactgaaggaaacttactacaagcattgtaagtaatgatccaatcaaggacatcaccaaacctgcaaagaataat |
42522358 |
T |
|
| Q |
113 |
tagacatgttattgccaatttgccatagcatagtgcaactatgtcacattacaatgattgattgattaagaaactaatgcaattgattatcttaattata |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42522357 |
tagacatgttattgccaatttgccatagcatagtgcaactatgtcacattacaatgattgattgattaagaaactaatgcaattggttatcttaattata |
42522258 |
T |
|
| Q |
213 |
tcatacaactcattgattaagactcaccaaaaaagggaactgagagaccaataacaagggtagaaaatac |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42522257 |
tcatacaactcattgattaagactcaccaaaaaagggaactgagagaccaataacaagggtagaaaatac |
42522188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 19240269 - 19240333
Alignment:
| Q |
41 |
tgaaggaaacttactacaagcattgtaagtaatgatccaatcaaggacatcaccaaacctgcaaa |
105 |
Q |
| |
|
|||||||||||||| |||| |||||| || || |||||||| || ||||| |||||||||||||| |
|
|
| T |
19240269 |
tgaaggaaacttacaacaaacattgtgagcaaggatccaattaatgacattaccaaacctgcaaa |
19240333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University