View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_5 (Length: 781)
Name: NF8978_low_5
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 629; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 18 - 739
Target Start/End: Complemental strand, 37147884 - 37147161
Alignment:
| Q |
18 |
agacctgaacatgtaaccaaaaaagtaatagccagacccgaacattagagaatacagagcttcaggctatggttttcgtaatggattgataatcgctatt |
117 |
Q |
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||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37147884 |
agacctgaacatgtaactataaaaataatagccagacccgaacattagagaatacagagcttcaggctatggttttcgtaatggattgataatcgctatt |
37147785 |
T |
|
| Q |
118 |
gatttctcttaattaagagttcaacattgatttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37147784 |
aatttctcttaattaagagttcaacattgatttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttc |
37147685 |
T |
|
| Q |
218 |
aatttcataccttttgctacacaaaatcatattcaaaacaaaaggattatctttaaataaatacctctcagatnnnnnnnttgcagaaagtcagaaacat |
317 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
37147684 |
aatttcatacctttagctacacaaaatcatattcaaaacaaaaggattatctctaaataaatacctctcagataaaaaaattgcagaaagtcagaaacat |
37147585 |
T |
|
| Q |
318 |
tatgagtagaaaaggaatgaagaaaaaatgattatcattagttgtaactagctttgtacatcaagtatttataagctatgctaactaacttgaactaact |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37147584 |
tatgagtagaaaaggaatgaagaaaaaatgattatcattagttgtaactagctttgtacatcaagtatttataagctatgctaactaacatgaactaact |
37147485 |
T |
|
| Q |
418 |
taaaccataggattattacatcagtaactaactttctagtttacttgctatgcaagtcatcactatcttccttggccgttgcttctatctctattatttg |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37147484 |
taaaccataggattattacatcagtaactaactttctagtttacttgctatgcaagtcatcactatcttccttggcccttgcttctatctctattatttg |
37147385 |
T |
|
| Q |
518 |
cgtgatgcaatatccccacaagttggtggttgataaatgttgatcatccccaacttcttgacggctgaagctggactttgtcgttcacatgtctttcaat |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37147384 |
cgtgatgcaatatccccacaagttggtggttgataaatgttgatcatccccaacttcttgacggctgaagctggactttgtcgttcacatgtctttcaat |
37147285 |
T |
|
| Q |
618 |
ggtgggttttaaccggcgacaaatctgttggttttaaggtagt--nnnnnnnnntcaggatttttgttaagaactggataggttctttgatggttaaagc |
715 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37147284 |
ggtgggttttaaccggcgacaaatctgttggttttaaggtagtaaaaaaaaaaatcaggatttttgttaagaactgaataggttctttgatggttaaagc |
37147185 |
T |
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| Q |
716 |
tccaggatccggtgaatgttacat |
739 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
37147184 |
tccaggatccggtgaatgttacat |
37147161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 7e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 7894431 - 7894562
Alignment:
| Q |
90 |
ttttcgtaatggattgataatcgctattgatttctcttaattaagagttcaacattgatttaattaattaattcacaattttgttttcaacttcgtccaa |
189 |
Q |
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|||||||| | || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| ||||| |
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| T |
7894431 |
ttttcgtattcgactgataatcgctattgatttcccttaattaagagttcaactttgatttaattaattaattcacaatttcgttttcaatttcatccaa |
7894530 |
T |
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| Q |
190 |
caaacatcccttgtaatttatcctcttcaatt |
221 |
Q |
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||||||| |||||||||||||||||||||| |
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| T |
7894531 |
caaacatttattgtaatttatcctcttcaatt |
7894562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 35718141 - 35718220
Alignment:
| Q |
149 |
ttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatttcatacc |
228 |
Q |
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|||||||||||||| ||||| | ||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||||| |
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| T |
35718141 |
ttaattaattaatttacaatgtcgttttcaactttgtccaacaaacattctttgtaatttgtcctcttcaatttcatacc |
35718220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 35411163 - 35411082
Alignment:
| Q |
147 |
atttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatttcatacc |
228 |
Q |
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|||||||||||||||||||||||| ||||| || |||||||||||||||| | ||| ||||||||||||| ||||| ||||| |
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| T |
35411163 |
atttaattaattaattcacaatttcgttttgaatttcgtccaacaaacattcattgaaatttatcctctttaattttatacc |
35411082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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