View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_56 (Length: 278)
Name: NF8978_low_56
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 26 - 268
Target Start/End: Original strand, 34137318 - 34137560
Alignment:
| Q |
26 |
cttcctcttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaag |
125 |
Q |
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| T |
34137318 |
cttcctcttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaag |
34137417 |
T |
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| Q |
126 |
aaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcagatggatttggaacttcattgtggaatattggagagaggtcaatta |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34137418 |
aaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcagatggatttggaacttcattgtggaatattggagagaggtcaatta |
34137517 |
T |
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| Q |
226 |
cgggaattcctttggcttcaatgattgagagttttggtctgtg |
268 |
Q |
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| T |
34137518 |
cgggaattcctttggcttcaatgattgagagttttggtctgtg |
34137560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 26 - 268
Target Start/End: Original strand, 34133407 - 34133649
Alignment:
| Q |
26 |
cttcctcttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaag |
125 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| |||||| ||||||||||||||||||||||||| ||| |
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| T |
34133407 |
cttcttcttctcctccaaactctgagcaaagaacaatctagaagcttcctcaagtctctgccttagactcaaagggactccatggtttgtgacttgaaag |
34133506 |
T |
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| Q |
126 |
aaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcagatggatttggaacttcattgtggaatattggagagaggtcaatta |
225 |
Q |
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| T |
34133507 |
aaaccccactccttgcttgcacttccaatctccttcaccaagttttcaatatcagatggatttggaactgcatggtgaagaattggagagaggtcaattt |
34133606 |
T |
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| Q |
226 |
cgggaattcctttggcttcaatgattgagagttttggtctgtg |
268 |
Q |
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| T |
34133607 |
cgggaattcctttggcttcgatgatggagagttttggtctgtg |
34133649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 26 - 268
Target Start/End: Original strand, 34140981 - 34141223
Alignment:
| Q |
26 |
cttcctcttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaag |
125 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| ||| |
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| T |
34140981 |
cttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagactcaaagggactccatggtttgtgactttaaag |
34141080 |
T |
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| Q |
126 |
aaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcagatggatttggaacttcattgtggaatattggagagaggtcaatta |
225 |
Q |
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| T |
34141081 |
aatccccacgctttgcatgcacttccaatctccttgactaagctttcaatagcagatggatttggaacttcattgtggaatattggagagagatcaattt |
34141180 |
T |
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| Q |
226 |
cgggaattcctttggcttcaatgattgagagttttggtctgtg |
268 |
Q |
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| T |
34141181 |
ctggaatacctttggcttctatgagggagagttttggtctgtg |
34141223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 33 - 268
Target Start/End: Original strand, 34127141 - 34127376
Alignment:
| Q |
33 |
ttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaagaaacccc |
132 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||| ||||||| |||||||||| ||||| ||||| |||| |
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| T |
34127141 |
ttctcctccaaactttgagcaaagaacaatctagcagcttcatcaagtctttgcctaatactcaaagggacctcatggtttgtaacttgaaagaagcccc |
34127240 |
T |
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| Q |
133 |
actctttgcatgcacttccaatttccttcactaagttttcaatatcagatggatttggaacttcattgtggaatattggagagaggtcaattacgggaat |
232 |
Q |
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| || ||||||||||||||||| | |||||| ||| | |||||| ||||| ||| | ||||||||| |||||||||||| |||||||||||| ||||||| |
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| T |
34127241 |
attccttgcatgcacttccaatcttcttcaccaagctatcaatagcagattgatcttgaacttcatggtggaatattggtgagaggtcaatttcgggaat |
34127340 |
T |
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| Q |
233 |
tcctttggcttcaatgattgagagttttggtctgtg |
268 |
Q |
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||||| |||||||||||| || |||||||||||||| |
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| T |
34127341 |
tccttcggcttcaatgatggatagttttggtctgtg |
34127376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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