View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8978_low_63 (Length: 243)

Name: NF8978_low_63
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8978_low_63
NF8978_low_63
[»] chr6 (13 HSPs)
chr6 (17-211)||(8101113-8101307)
chr6 (13-105)||(13360316-13360407)
chr6 (13-69)||(7265572-7265628)
chr6 (14-105)||(32978842-32978933)
chr6 (13-68)||(32511646-32511701)
chr6 (15-105)||(7977773-7977863)
chr6 (13-95)||(33001242-33001324)
chr6 (13-105)||(9658903-9658996)
chr6 (13-62)||(19040376-19040425)
chr6 (13-50)||(32298605-32298642)
chr6 (14-47)||(34868787-34868820)
chr6 (13-69)||(12627556-12627612)
chr6 (13-105)||(24645505-24645597)
[»] chr7 (10 HSPs)
chr7 (13-105)||(18035808-18035899)
chr7 (13-105)||(20549815-20549907)
chr7 (13-59)||(640137-640183)
chr7 (13-105)||(15680833-15680925)
chr7 (13-105)||(33994236-33994328)
chr7 (55-105)||(2334326-2334376)
chr7 (13-59)||(22868066-22868112)
chr7 (15-47)||(17307919-17307951)
chr7 (15-47)||(18013075-18013107)
chr7 (16-68)||(22484052-22484104)
[»] chr3 (7 HSPs)
chr3 (13-100)||(3631708-3631795)
chr3 (13-100)||(25093526-25093613)
chr3 (13-69)||(40993314-40993370)
chr3 (13-47)||(11313801-11313835)
chr3 (17-63)||(15505775-15505821)
chr3 (13-105)||(13845468-13845560)
chr3 (13-105)||(55401099-55401191)
[»] chr1 (12 HSPs)
chr1 (17-105)||(16927130-16927216)
chr1 (13-100)||(5898214-5898301)
chr1 (13-69)||(43492473-43492529)
chr1 (13-47)||(7918212-7918246)
chr1 (13-47)||(13436482-13436516)
chr1 (13-47)||(25361910-25361944)
chr1 (13-70)||(36878485-36878542)
chr1 (13-69)||(1815281-1815337)
chr1 (13-69)||(18337353-18337409)
chr1 (13-105)||(22515830-22515922)
chr1 (13-69)||(40181895-40181951)
chr1 (13-69)||(40258912-40258968)
[»] scaffold0022 (1 HSPs)
scaffold0022 (17-95)||(90871-90949)
[»] chr2 (5 HSPs)
chr2 (13-70)||(20242705-20242762)
chr2 (13-105)||(2438662-2438754)
chr2 (13-67)||(5367216-5367270)
chr2 (13-46)||(31808101-31808134)
chr2 (13-69)||(29176472-29176528)
[»] chr8 (7 HSPs)
chr8 (13-105)||(3025575-3025667)
chr8 (14-100)||(33405332-33405418)
chr8 (13-66)||(9414857-9414910)
chr8 (13-46)||(11803283-11803316)
chr8 (13-53)||(4786333-4786373)
chr8 (13-69)||(20679374-20679430)
chr8 (13-69)||(31557020-31557076)
[»] chr5 (6 HSPs)
chr5 (13-69)||(30502367-30502423)
chr5 (13-69)||(30542710-30542766)
chr5 (17-68)||(32630715-32630766)
chr5 (13-105)||(21190999-21191091)
chr5 (16-100)||(30098986-30099070)
chr5 (13-69)||(42893384-42893440)
[»] chr4 (10 HSPs)
chr4 (17-69)||(8402721-8402773)
chr4 (15-105)||(4672028-4672118)
chr4 (13-47)||(15029789-15029823)
chr4 (13-46)||(36635348-36635381)
chr4 (13-110)||(715543-715642)
chr4 (13-110)||(752869-752968)
chr4 (13-69)||(9996864-9996920)
chr4 (19-99)||(20950376-20950456)
chr4 (13-105)||(35161060-35161152)
chr4 (13-69)||(40179615-40179671)
[»] scaffold0793 (1 HSPs)
scaffold0793 (13-110)||(4819-4918)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 8101113 - 8101307
Alignment:
Q  17 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttcaaagatgttatc 116  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||  ||||||| ||||||||||    
T  8101113 ataatccagtgtaattatatgtgtcagtgtcaaatacaacacatgtccgacatggaaacacgtctagtccaaagaatgtctatggttcatagatgttatc 8101212  T
Q  117 ctttccctcaaatttgtactataacaaaatcannnnnnnacgaatacctaaatattacaaaagaacaaagttatcaaaaagagaggagttaatac 211  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8101213 ctttccctcaaatttgtactataacaaaatcatttttttacgaatacctaaatattacaaaagaacaaagttatcaaaaagagaggagttaatac 8101307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 13360407 - 13360316
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    |||||||||||||||||||||||||| |  |||||||| |||||| ||||||||||| || ||||| ||| ||| ||||||||||||| ||||    
T  13360407 tcacataattcagtgtaattatatgtttcggtgtcagacacaaca-atgtccgacactgagacacgcctaatccgaagagtgtccgtgcttca 13360316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 7265628 - 7265572
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    ||||||||||||||||||||||||||||  ||||| || |||| |||||||||||||    
T  7265628 tcacataattcagtgtaattatatgtgtcggtgtcggacacaatacatgtccgacac 7265572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 32978933 - 32978842
Alignment:
Q  14 cacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    ||||||||| |||||||||| | ||||  ||||| || || ||||||||||||||| |  ||||||||| ||||| ||||||||||| ||||    
T  32978933 cacataattaagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttca 32978842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 32511701 - 32511646
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgaca 68  Q
    ||||||||||||||||||||||| ||||| ||||| ||||| ||| ||||| ||||    
T  32511701 tcacataattcagtgtaattataagtgttggtgtcggatacgacatatgtctgaca 32511646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 7977863 - 7977773
Alignment:
Q  15 acataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    ||||||||||||||||||| | ||||  ||||| || |||||| ||||||||||  |||||||| ||| || || |||||| |||| ||||    
T  7977863 acataattcagtgtaattacaagtgtcggtgtcggacacaacatatgtccgacaacgaaacacgcctaatctaaggagtgttcgtgcttca 7977773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 33001324 - 33001242
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgt 95  Q
    |||||||||| | |||||||||||||||  ||||| || || |||| |||| ||||| |||| ||| ||| ||||||||||||    
T  33001324 tcacataattaaatgtaattatatgtgtcggtgtcggacacgacacgtgtctgacaccgaaatacgcctaatccaaagagtgt 33001242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 9658903 - 9658996
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtct-agtccaaagagtgtccgtggttca 105  Q
    |||||||||||||||||||||||| |||  |||| ||| || |||| |||| ||||| | |||||| || | ||||| ||||||||||| ||||    
T  9658903 tcacataattcagtgtaattatatttgtcggtgttagacacgacacgtgtctgacaccggaacacgcctaattccaaggagtgtccgtgcttca 9658996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 19040376 - 19040425
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgt 62  Q
    ||||||||||||||||||||||||||||  ||||| || || ||||||||    
T  19040376 tcacataattcagtgtaattatatgtgtctgtgtcggacacgacacatgt 19040425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 32298642 - 32298605
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcaga 50  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  32298642 tcacataatttagtgtaattatatgtgttggtgtcaga 32298605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 34868820 - 34868787
Alignment:
Q  14 cacataattcagtgtaattatatgtgttagtgtc 47  Q
    ||||||||||||||||||||||||| ||||||||    
T  34868820 cacataattcagtgtaattatatgtcttagtgtc 34868787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 12627612 - 12627556
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    ||||||||||||||||||| ||||||||   |||| || || |||||||||||||||    
T  12627612 tcacataattcagtgtaataatatgtgtcgatgtcggacaccacacatgtccgacac 12627556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 24645505 - 24645597
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    |||||||||||||| || ||| | ||||  |||||||| || |||| ||||||||||  | ||||||||| ||| ||||||||| ||| ||||    
T  24645505 tcacataattcagtatagttacaagtgtcggtgtcagacacgacacgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgcttca 24645597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 18035899 - 18035808
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    ||||||||||||| ||||||| |||||| ||||| |||||  ||||||||| ||||||| |||||||||| ||| | ||||||||||| ||||    
T  18035899 tcacataattcagcgtaattacatgtgtcagtgtgagataggacacatgtctgacacgg-aacacgtctaatccgaggagtgtccgtgcttca 18035808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 20549815 - 20549907
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    |||| |||||||||||||||||||||||  ||||| || |||||||||||||||||  || ||||| ||| ||| | ||||| ||||| ||||    
T  20549815 tcacgtaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttca 20549907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 640137 - 640183
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacaca 59  Q
    ||||||||||||||||||||||||||||  ||||||||||| |||||    
T  640137 tcacataattcagtgtaattatatgtgtcggtgtcagatacgacaca 640183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 15680833 - 15680925
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    |||||||||| |||||||||||| ||||  ||||| || || |||| |||||||||| || ||||||||| | | | ||||||||||| ||||    
T  15680833 tcacataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttca 15680925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 33994236 - 33994328
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    ||||||||||||||| ||||| | ||||  |||||||| || |||||||||| |||| || ||||| ||| ||||| |||||| |||| ||||    
T  33994236 tcacataattcagtgcaattacaagtgtcggtgtcagacacgacacatgtccaacaccgagacacgcctaatccaaggagtgttcgtgtttca 33994328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 2334326 - 2334376
Alignment:
Q  55 acacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    ||||||||||||||| |||||||||||| ||| | ||||||||||| ||||    
T  2334326 acacatgtccgacactgaaacacgtctaatccgaggagtgtccgtgtttca 2334376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 22868066 - 22868112
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacaca 59  Q
    |||||||||||||||||||||||||||| ||| ||| | ||||||||    
T  22868066 tcacataattcagtgtaattatatgtgtcagtatcaaacacaacaca 22868112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 17307919 - 17307951
Alignment:
Q  15 acataattcagtgtaattatatgtgttagtgtc 47  Q
    ||||||||||||||||||||||||||| |||||    
T  17307919 acataattcagtgtaattatatgtgttggtgtc 17307951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 18013107 - 18013075
Alignment:
Q  15 acataattcagtgtaattatatgtgttagtgtc 47  Q
    |||||||||||||||||||||||||| ||||||    
T  18013107 acataattcagtgtaattatatgtgtcagtgtc 18013075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 22484052 - 22484104
Alignment:
Q  16 cataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgaca 68  Q
    ||||||||||| |||||||||||||  |||||||| |  ||||||||||||||    
T  22484052 cataattcagtataattatatgtgtcggtgtcagacatgacacatgtccgaca 22484104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 3631708 - 3631795
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtg 100  Q
    |||||||||||||||||||||||||||  |||||| || || |||||||||||||||    ||||| ||||||| | |||||||||||    
T  3631708 tcacataattcagtgtaattatatgtgccagtgtcggacacgacacatgtccgacaccaggacacgcctagtccgaggagtgtccgtg 3631795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 25093526 - 25093613
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtg 100  Q
    ||||| ||||||||||||||||||||||  ||||| || |||||||||||||||||| ||| ||| |||| ||  |||||||| ||||    
T  25093526 tcacacaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacactgaagcacttctaatctgaagagtgttcgtg 25093613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 40993370 - 40993314
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    ||||||||||||||||||||||||||||  ||||| || || |||||||||||||||    
T  40993370 tcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacac 40993314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 11313835 - 11313801
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtc 47  Q
    |||||||||| ||||||||||||||||||||||||    
T  11313835 tcacataatttagtgtaattatatgtgttagtgtc 11313801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 15505821 - 15505775
Alignment:
Q  17 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtc 63  Q
    ||||||||||||||||||| ||||| ||||| || ||||||||||||    
T  15505821 ataattcagtgtaattataagtgttggtgtcggacacaacacatgtc 15505775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 13845560 - 13845468
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    ||||| ||| ||||||||||||||||||  ||||| || || | || |||| |||||||| ||||| ||  ||||| ||||||||||| ||||    
T  13845560 tcacaaaatgcagtgtaattatatgtgtcggtgtcggacacgagacgtgtctgacacggagacacgccttatccaaggagtgtccgtgcttca 13845468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 55401099 - 55401191
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    |||||||||| |||||||||| | ||||  ||||| || || |||| |||||||||| || ||||| ||| ||| | ||||||||||| ||||    
T  55401099 tcacataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttca 55401191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 16927216 - 16927130
Alignment:
Q  17 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    |||||||||||||||||||| |||| ||||||||||| | |||| |||||||| ||||||||  || ||||||||| ||||||| ||||    
T  16927216 ataattcagtgtaattatatatgttggtgtcagatacga-acatatccgacac-gaaacacgcataatccaaagagcgtccgtgcttca 16927130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 5898301 - 5898214
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtg 100  Q
    ||||||||||||||||||||||||| ||  |||||||| || |||| ||||| |||| |  ||||||||| ||| | |||||||||||    
T  5898301 tcacataattcagtgtaattatatgcgtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtg 5898214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 43492529 - 43492473
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    |||| |||||| |||||||||| |||||  |||||||| ||||||||||||||||||    
T  43492529 tcacgtaattcggtgtaattatgtgtgtcggtgtcagacacaacacatgtccgacac 43492473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 7918246 - 7918212
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtc 47  Q
    |||||||||||||||||||||||||||| ||||||    
T  7918246 tcacataattcagtgtaattatatgtgtcagtgtc 7918212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 13436482 - 13436516
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtc 47  Q
    ||||||||||||||||||||||||||||| |||||    
T  13436482 tcacataattcagtgtaattatatgtgttggtgtc 13436516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 25361910 - 25361944
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtc 47  Q
    |||||||||||||||||||||||||||| ||||||    
T  25361910 tcacataattcagtgtaattatatgtgtcagtgtc 25361944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 36878485 - 36878542
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacg 70  Q
    ||||||||||||||||||||||| ||||  ||||| || || | ||||||||||||||    
T  36878485 tcacataattcagtgtaattataggtgtcggtgtctgacacgaaacatgtccgacacg 36878542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 1815281 - 1815337
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    ||||||||||||||||||||| | ||||  ||||| || || |||||||||||||||    
T  1815281 tcacataattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacac 1815337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 18337353 - 18337409
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    ||||||||||||||||||||| | ||||  ||||| || ||||||| ||||||||||    
T  18337353 tcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgacac 18337409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 22515922 - 22515830
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    |||||||||| |||||||||| | ||||  ||||| || || |||||| |||||||| || ||||| ||| ||| | ||||||||||| ||||    
T  22515922 tcacataatttagtgtaattacaagtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttca 22515830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 40181895 - 40181951
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    |||||||||||||||||||||||||| |  ||||| || ||||||| ||||| ||||    
T  40181895 tcacataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtcctacac 40181951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 40258968 - 40258912
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    ||||||||||||||||||||| | ||||  |||||||| || |||| ||||||||||    
T  40258968 tcacataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacac 40258912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 90871 - 90949
Alignment:
Q  17 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgt 95  Q
    |||||||||||||||||||| |||   ||||||| ||||||| ||||||||||  ||||||| ||| ||||| ||||||    
T  90871 ataattcagtgtaattatatatgtcgatgtcagacacaacacgtgtccgacaccaaaacacgcctaatccaatgagtgt 90949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 20242762 - 20242705
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacg 70  Q
    ||||||||||||||||||||||||||||  ||||| || ||||||| |||| ||||||    
T  20242762 tcacataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtctgacacg 20242705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 2438754 - 2438662
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    ||||||||||||||||||||| | ||||  ||||| || || ||||||||||||||| |  ||||| ||| ||| | ||||||||||| ||||    
T  2438754 tcacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttca 2438662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 5367216 - 5367270
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgac 67  Q
    ||||||||||||||||||||||||||||  ||||| || || |||||| ||||||    
T  5367216 tcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatatccgac 5367270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 31808101 - 31808134
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgt 46  Q
    |||||||||||||||||||||||||||| |||||    
T  31808101 tcacataattcagtgtaattatatgtgtcagtgt 31808134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 29176528 - 29176472
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    ||||||||||||||||||||||| ||||| ||||  || ||  ||||||||||||||    
T  29176528 tcacataattcagtgtaattataagtgttggtgttggacacggcacatgtccgacac 29176472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 3025575 - 3025667
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    ||||||||||||||||||||||| |||| |||||| || || |||| |||| ||||| |  ||||| ||| ||| | ||||||||||| ||||    
T  3025575 tcacataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgcttca 3025667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 33405418 - 33405332
Alignment:
Q  14 cacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtg 100  Q
    ||||||||| |||||||||||||||||  ||||| || || ||||||||| |||||    ||||| ||| ||||| |||||||||||    
T  33405418 cacataatttagtgtaattatatgtgtcggtgtcggacacgacacatgtctgacacctggacacggctaatccaatgagtgtccgtg 33405332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 9414910 - 9414857
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccga 66  Q
    ||||||||||||||| ||||||| ||||| |||||||| || |||| |||||||    
T  9414910 tcacataattcagtgcaattataagtgttggtgtcagacacgacacgtgtccga 9414857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 11803283 - 11803316
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgt 46  Q
    ||||||||||||||||||||||||||||| ||||    
T  11803283 tcacataattcagtgtaattatatgtgttggtgt 11803316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 4786373 - 4786333
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatac 53  Q
    ||||||||||||||||||||||||||||  ||||| |||||    
T  4786373 tcacataattcagtgtaattatatgtgtcggtgtcggatac 4786333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 20679430 - 20679374
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    ||||||| ||||||||||||||| ||||  ||||||||  |||||| ||||||||||    
T  20679430 tcacatagttcagtgtaattataagtgtcggtgtcagacgcaacacgtgtccgacac 20679374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 31557020 - 31557076
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    ||||||||||||||||||||| | || |  |||||||| || |||||||||||||||    
T  31557020 tcacataattcagtgtaattacaagtttcggtgtcagacacgacacatgtccgacac 31557076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 30502423 - 30502367
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    |||| |||||||||||||||||||||||  ||||| || || |||||||||||||||    
T  30502423 tcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacac 30502367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 30542766 - 30542710
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    |||| |||||||||||||||||||||||  ||||| || || |||||||||||||||    
T  30542766 tcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacac 30542710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 32630766 - 32630715
Alignment:
Q  17 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgaca 68  Q
    |||||||| ||||||||||||||| |||||| ||||| |||| |||||||||    
T  32630766 ataattcaatgtaattatatgtgtcagtgtcggatacgacacgtgtccgaca 32630715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 21191091 - 21190999
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    ||||||||||||||||||||| | ||||  ||||| || ||||||| |||||||| | |  ||||| ||| ||| | ||||||||||| ||||    
T  21191091 tcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttca 21190999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 30099070 - 30098986
Alignment:
Q  16 cataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtg 100  Q
    |||||||| ||||||||||||||||  ||||| ||||| |||| |||| |||||||  ||||| ||  ||||| |||||| ||||    
T  30099070 cataattctgtgtaattatatgtgtcggtgtcggatacgacacgtgtctgacacggggacacgccttatccaaggagtgttcgtg 30098986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 42893384 - 42893440
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    ||||||||| ||||||||||| | ||||  |||||||| ||||||| ||||||||||    
T  42893384 tcacataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacac 42893440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 8402773 - 8402721
Alignment:
Q  17 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    |||||||||||||||||||||| | ||||||||| || |||| ||||||||||    
T  8402773 ataattcagtgtaattatatgtctcagtgtcagacacgacacttgtccgacac 8402721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 4672118 - 4672028
Alignment:
Q  15 acataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    |||||||||||||||  |||||||||  ||||| ||||||| || ||| |||||| | |||| ||||| ||||| ||||||| ||| ||||    
T  4672118 acataattcagtgtagctatatgtgtcggtgtcggatacaaaacgtgttcgacactggaacatgtctaatccaaggagtgtctgtgcttca 4672028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 15029789 - 15029823
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtc 47  Q
    ||||||||||||||||||||||||||||| |||||    
T  15029789 tcacataattcagtgtaattatatgtgttggtgtc 15029823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 36635348 - 36635381
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgt 46  Q
    ||||||||||||||||||||||||||||| ||||    
T  36635348 tcacataattcagtgtaattatatgtgttcgtgt 36635381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 715642 - 715543
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagataca--acacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttcaaagat 110  Q
    ||||||||||||||||||||| | ||||| |||||   ||||  ||||||||||||||| |  ||||| ||| ||| | ||||||||||| |||| ||||    
T  715642 tcacataattcagtgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 715543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 752968 - 752869
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagataca--acacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttcaaagat 110  Q
    ||||||||||||||||||||| | ||||| |||||   ||||  ||||||||||||||| |  ||||| ||| ||| | ||||||||||| |||| ||||    
T  752968 tcacataattcagtgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 752869  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 9996864 - 9996920
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    |||||||||||||| ||||||||||| |  |||||||| | ||||| ||||||||||    
T  9996864 tcacataattcagtataattatatgtctcggtgtcagacataacacgtgtccgacac 9996920  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 20950456 - 20950376
Alignment:
Q  19 aattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgt 99  Q
    ||||||||||||||||||||||  |||||||| || | |||||| | |||| ||||||||  || ||||| ||||| ||||    
T  20950456 aattcagtgtaattatatgtgtcggtgtcagacacgatacatgttcaacacagaaacacgcataatccaaggagtgcccgt 20950376  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 35161060 - 35161152
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 105  Q
    ||||||||||||||||||||||| || | || ||| || || |||| |||||||||| | |||||  ||| ||| || |||||||||| ||||    
T  35161060 tcacataattcagtgtaattataagtatcagagtcggacacgacacgtgtccgacaccggaacacacctaatccgaaaagtgtccgtgcttca 35161152  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 40179671 - 40179615
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 69  Q
    ||||||||||||||||||||||||| ||  ||||| || || |||||||| ||||||    
T  40179671 tcacataattcagtgtaattatatgcgtcggtgtcggacacgacacatgttcgacac 40179615  T

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Target: scaffold0793 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 4918 - 4819
Alignment:
Q  13 tcacataattcagtgtaattatatgtgttagtgtcagataca--acacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttcaaagat 110  Q
    ||||||||||||||||||||| | ||||| |||||   ||||  ||||||||||||||| |  ||||| ||| ||| | ||||||||||| |||| ||||    
T  4918 tcacataattcagtgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 4819  T

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