View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_66 (Length: 239)
Name: NF8978_low_66
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_66 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 14241757 - 14241993
Alignment:
| Q |
1 |
cacagattgattttgtgaagtataggctatcccagtaggtgcatcattctgtaatacaacaacattgaannnnnnnctggaacatgttaattcttttcat |
100 |
Q |
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| T |
14241757 |
cacatattgattttgtgaagtataggctatcccagtaggtgcatcattctgtaatacaaaaacattgaatttttt-ctggaaaatgttaattcttttcat |
14241855 |
T |
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| Q |
101 |
aattagcataataataatgacgattttgttggtaggttcaacattttctggtatacaatattgatagaagtatgaaaataccttgaagctaattccaaag |
200 |
Q |
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| T |
14241856 |
aattagcataataataatgacgattttgttggtag-ttcagcattttctggtatacaatattgatagaagtatgaaaataccttgaagctaattccaaag |
14241954 |
T |
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| Q |
201 |
gcaatgaaatccgaggcttcaactttgaaggtggcagaa |
239 |
Q |
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| T |
14241955 |
gcaatgaaatccaaggcttcaactttgaaggtggcagaa |
14241993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 12956721 - 12956606
Alignment:
| Q |
124 |
ttttgttggtaggttcaacattttctggtatacaatattgatagaa-gtatgaaaataccttgaagctaattccaaaggcaatgaaatccgaggcttcaa |
222 |
Q |
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| T |
12956721 |
ttttgttggtaa-ttcaacattttatggtatacaatattagtagaaagtatgatattaccttgaagctaattccaaaggcaatgaaatcgggggcttcaa |
12956623 |
T |
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| Q |
223 |
ctttgaaggtggcagaa |
239 |
Q |
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| T |
12956622 |
ctttgaaggtggcagaa |
12956606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 12957213 - 12957147
Alignment:
| Q |
1 |
cacagattgattttgtgaagtataggctatcccagtaggtgcatcattctgtaatacaacaacattg |
67 |
Q |
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| T |
12957213 |
cacagattgattttgtgaagtataggcaactcctgtaggtgcatcattctataatgcaacaacattg |
12957147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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