View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8978_low_67 (Length: 227)

Name: NF8978_low_67
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8978_low_67
NF8978_low_67
[»] chr7 (3 HSPs)
chr7 (141-217)||(8411843-8411919)
chr7 (43-105)||(8411745-8411807)
chr7 (1-45)||(8411657-8411701)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 8411843 - 8411919
Alignment:
Q  141 aactgtgaatggtaaacgggtcgcctatcgctgtgaaagtgcaaattatcactaataattcataagcattatcaaca 217  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8411843 aactgtgaatggaaaacgggtcgcctatcgctgtgaaagtgcaaattatcactaataattcataagcattatcaaca 8411919  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 8411745 - 8411807
Alignment:
Q  43 ataagagtcataagaatcataaggtctttcttgaattggaagcacttgaatacatatctgtac 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8411745 ataagagtcataagaatcataaggtctttcttgaattggaagcacttgaatacatatcggtac 8411807  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8411657 - 8411701
Alignment:
Q  1 tcaaacagtttatgagcttatatgtggttgaaggtctttcttata 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8411657 tcaaacagtttatgagcttatatgtggttgaaggtctttcttata 8411701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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