View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8978_low_7 (Length: 778)
Name: NF8978_low_7
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 697; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 18 - 766
Target Start/End: Complemental strand, 28576658 - 28575910
Alignment:
| Q |
18 |
cttttatgtggcttcaaggaaacaagttttttagggaaatatttaggtgtgccgttgcttggaagagcaccaaaacgagcagattttcaatatgttattg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28576658 |
cttttatgtggcttcaaggaaacaagttttttagggaaatatttaggtgtgccgttgcttggaagagcaccaaaacgagcagattttcaatatgttattg |
28576559 |
T |
|
| Q |
118 |
atcaagtgaatggtaagcttgcggcgtggaaaactaaccaactctcgtttgctgggagagtaacactagctaagagtgttattgaagctgttccaatata |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28576558 |
atcaggtgaatggtaagcttgcggcgtggaaaactaatcaactctcgtttgctgggagagtaacactagctaagagtgttattgaagctgttccaatata |
28576459 |
T |
|
| Q |
218 |
tcccatgatgactaatattattcctaaggtgtgtattgacgaaattcataaaatccaacgacaattcatatggggtgacaacgagaacaacaggagatac |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28576458 |
tcccatgatgactaatattattcctaaggcgtgtattgacgaaattcataaaatccaacgacaattcatatggggtgacaacgagaacaacaagagatat |
28576359 |
T |
|
| Q |
318 |
catgctgttagttgggaaacggtgtcaaaaccaaaagtctttggtggtctaggcttaaggagactcaacgtaatgaataaggcgtgcataatgaaaatgg |
417 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28576358 |
catgttgttagttgggaaacagtgtcaaaaccaaaagtctttggtggtctaggcttaaggagactcaacgtaatgaataaggcgtgcataatgaaactgg |
28576259 |
T |
|
| Q |
418 |
gttggagtatatattatggatcaacttctctttgggctgaggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaacc |
517 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28576258 |
gttggagtatatattctggatcaacttctctttgggctgaggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaacc |
28576159 |
T |
|
| Q |
518 |
gtcggattcaagcctctggaaggctttagtaaagttatggcctgcgttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggtgcctgg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28576158 |
gtcggattcaagcctctggaaggctttagtaaagttatggcctgcattagagcgaaatattttttggtcgataggcgatggtaaaagtgttggagcctgg |
28576059 |
T |
|
| Q |
618 |
agtcaaatgtggattgaggagaggctttgtgtgtccgagttagaaattgatattccgcaatagtgtaaagagatgaaggttgcagatctggttgatttta |
717 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28576058 |
attcaaatgtggattgaggagaggctttgtgtgtccgagttagaaattgatattccgcaacagtgtaaagagatgaaggttgcagatctggttgatttta |
28575959 |
T |
|
| Q |
718 |
atggtaattggaattttgaattgttgaatcaatggttgccttatgatgt |
766 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28575958 |
atggtaattggaattttgaattgttgaatcaatggttgccttatgatgt |
28575910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 693; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 18 - 766
Target Start/End: Original strand, 16235786 - 16236534
Alignment:
| Q |
18 |
cttttatgtggcttcaaggaaacaagttttttagggaaatatttaggtgtgccgttgcttggaagagcaccaaaacgagcagattttcaatatgttattg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16235786 |
cttttatgtggcttcaaggaaacaagttttttagggaaatatttaggtgtgccgttgcttggaagagcaccaaaacgagcagattttcaatatgttattg |
16235885 |
T |
|
| Q |
118 |
atcaagtgaatggtaagcttgcggcgtggaaaactaaccaactctcgtttgctgggagagtaacactagctaagagtgttattgaagctgttccaatata |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16235886 |
atcaagtgaatggtaagcttgcggcgtggaaaactaatcaactctcgtttgctgggagagtgacactagctaagagtgttattgaagctgttccaatata |
16235985 |
T |
|
| Q |
218 |
tcccatgatgactaatattattcctaaggtgtgtattgacgaaattcataaaatccaacgacaattcatatggggtgacaacgagaacaacaggagatac |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
16235986 |
tcccatgatgactaatattattcctaaggcatgtattgacgaaattcataaaatccaacgacaattcatatcgggtgacaacgagaacaacaagagatat |
16236085 |
T |
|
| Q |
318 |
catgctgttagttgggaaacggtgtcaaaaccaaaagtctttggtggtctaggcttaaggagactcaacgtaatgaataaggcgtgcataatgaaaatgg |
417 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16236086 |
catgctgttagttgggaaacagtgtcaaaaccaaaagtctttggtggtctaggcttaaggagactcaacgtaatgaataaggcgtgcataatgaaactgg |
16236185 |
T |
|
| Q |
418 |
gttggagtatatattatggatcaacttctctttgggctgaggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaacc |
517 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16236186 |
gttggagtatatattctggatcaacttctctttgggctgaggttatgaggggtaaatatcagcgaagtgatattcttgctgagttatttatagcaaaacc |
16236285 |
T |
|
| Q |
518 |
gtcggattcaagcctctggaaggctttagtaaagttatggcctgcgttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggtgcctgg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16236286 |
gtcggattcaagcctctggaaggctttagtaaagttatggcctgcattagagcgaaatattttttggtcgataggcgatggtaaaagtgttggagcctgg |
16236385 |
T |
|
| Q |
618 |
agtcaaatgtggattgaggagaggctttgtgtgtccgagttagaaattgatattccgcaatagtgtaaagagatgaaggttgcagatctggttgatttta |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16236386 |
agtcaaatgtggattgaggagaggctttgtgtgtccgagttagaaattgatattccgcaacagtgtaaagagatgaaggttgcagatctggttgatttta |
16236485 |
T |
|
| Q |
718 |
atggtaattggaattttgaattgttgaatcaatggttgccttatgatgt |
766 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16236486 |
atggtaattggaattttgaattgttgaatcaatggttgccttatgatgt |
16236534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 300 - 766
Target Start/End: Complemental strand, 32715284 - 32714818
Alignment:
| Q |
300 |
gagaacaacaggagataccatgctgttagttgggaaacggtgtcaaaaccaaaagtctttggtggtctaggcttaaggagactcaacgtaatgaataagg |
399 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32715284 |
gagaacaacaagagatatcatgctgttagttgggaaacagtgtcaaaaccaaaagtctttggtggtctaggcttaaggagactcaacgtaatgaataagg |
32715185 |
T |
|
| Q |
400 |
cgtgcataatgaaaatgggttggagtatatattatggatcaacttctctttgggctgaggttatgaggggtaaatatcagcgaagtgatattcctgctga |
499 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32715184 |
cgtgcataatgaaactgggttggagtatatattctggatcaacttctctttgggctgaggttatgaggggtaaatatcagcgaagtgatattcctgctga |
32715085 |
T |
|
| Q |
500 |
gttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttatggcctgcgttagagcgaaatattttttggtcgataggcgatggt |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32715084 |
gttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttatggcctgctttagagcgaaatattttttggtcgataggcgatggt |
32714985 |
T |
|
| Q |
600 |
aaaagtgttggtgcctggagtcaaatgtggattgaggagaggctttgtgtgtccgagttagaaattgatattccgcaatagtgtaaagagatgaaggttg |
699 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32714984 |
aaaagtgttggagcctggattcaaatgtggattgaggagaggctttgtgtgtccgagttagaaattgatattccgcaacagtgtaaagagatgaaggttg |
32714885 |
T |
|
| Q |
700 |
cagatctggttgattttaatggtaattggaattttgaattgttgaatcaatggttgccttatgatgt |
766 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32714884 |
cagatctggttgatttttatggtaattggaattttgaattgttgaatcaatggttgccttatgatgt |
32714818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 5e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 543 - 766
Target Start/End: Original strand, 18567799 - 18568022
Alignment:
| Q |
543 |
ttagtaaagttatggcctgcgttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggtgcctggagtcaaatgtggattgaggagaggc |
642 |
Q |
| |
|
||||||||| |||||||| || ||||| ||||||||||| |||||||||| |||| ||||||||||| || | |||||||||||||||||||| ||||| |
|
|
| T |
18567799 |
ttagtaaagctatggcctacgatagagagaaatatttttgggtcgataggtaatggaaaaagtgttggagctttgagtcaaatgtggattgaggcgaggc |
18567898 |
T |
|
| Q |
643 |
tttgtgtgtccgagttagaaattgatattccgcaatagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgtt |
742 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| | || ||||||||||| |||||||||| ||||| ||| ||||||| || |||| |
|
|
| T |
18567899 |
gttgtgtgtccgagttagaaattgatattccgcaagagtgtaaaaacattaaggttgcagagttggttgatttcaatggaaatcggaatttggatatgtt |
18567998 |
T |
|
| Q |
743 |
gaatcaatggttgccttatgatgt |
766 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
18567999 |
gaatcaatagttgccttatgatgt |
18568022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 47 - 484
Target Start/End: Original strand, 5698128 - 5698561
Alignment:
| Q |
47 |
tttagggaaatatttaggtgtgccgttgcttggaagagcaccaaaacgagcagattttcaatatgttattgatcaagtgaatggtaagcttgcggcgtgg |
146 |
Q |
| |
|
|||||| |||||| |||| ||||| ||| | ||||||||||||||| |||| |||||||| ||| |||| |||||| ||| | ||||||| ||| |
|
|
| T |
5698128 |
tttaggaaaatatctaggagtgcctttgttaggaagagcaccaaaaagagccgattttcagtatattat----caagtgcatgtcatgcttgcgaattgg |
5698223 |
T |
|
| Q |
147 |
aaaactaaccaactctcgtttgctgggagagtaacactagctaagagtgttattgaagctgttccaatatatcccatgatgactaatattattcctaagg |
246 |
Q |
| |
|
||| | || || |||||||| || | ||||| ||||||||||||||||||||||| || ||||| ||||||| |||||||| | ||||||||| |||| |
|
|
| T |
5698224 |
aaagccaatcatctctcgttagccagaagagtgacactagctaagagtgttattgaggcagttcctttatatcctatgatgaccactattattcccaagg |
5698323 |
T |
|
| Q |
247 |
tgtgtattgacgaaattcataaaatccaacgacaattcatatggggtgacaacgagaacaacaggagataccatgctgttagttgggaaacggtgtcaaa |
346 |
Q |
| |
|
|||||| || || ||||| ||| | ||||| | || | ||||| |||| ||| | | ||||| ||||||||| |||||||||| |||| || |
|
|
| T |
5698324 |
cgtgtatcgaagagattcagaaacttcaacggaagtttgtttggggcgacacagaggttagtcgaagatatcatgctgttggttgggaaactatgtccaa |
5698423 |
T |
|
| Q |
347 |
accaaaagtctttggtggtctaggcttaaggagactcaacgtaatgaataaggcgtgcataatgaaaatgggttggagtatatattatggatcaacttct |
446 |
Q |
| |
|
|||||| | | |||| |||| ||||| || || | || ||||| ||||||||||| ||||| ||||||||||||| || | |||||||| ||| |
|
|
| T |
5698424 |
accaaagaccatctatggtttaggtttaagaaggctggatgttatgaacaaggcgtgcatcatgaagttgggttggagtatttactctggatcaaactct |
5698523 |
T |
|
| Q |
447 |
ctttgggctgaggttatgaggggtaaatatcagcgaag |
484 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
5698524 |
ctttgtactgaggttatgagaggtaaatatcagcgaag |
5698561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University