View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8978_low_76 (Length: 212)
Name: NF8978_low_76
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8978_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 5978853 - 5979035
Alignment:
| Q |
18 |
acatacatacttaatactatattatatactgttgcaactggacatgttacttattccattccatgtatgtatgtatctacgtgaatattattatattggt |
117 |
Q |
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| T |
5978853 |
acatacatacttaatactatattatatactgttgcaactggacatgttacttattccattccatgtatgtatgtatctacgtgaatattattatattgat |
5978952 |
T |
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| Q |
118 |
tcatgtttatcatatacctttttaaggaaccatccttatcatacttaaaactaaacggggcactattactatataaacaccaa |
200 |
Q |
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| T |
5978953 |
tcatgtttatcatatacctttttaaggaaccatccttatcatacttaaaactaaacggggcactattactatataaacaccaa |
5979035 |
T |
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