View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8978_low_78 (Length: 208)

Name: NF8978_low_78
Description: NF8978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8978_low_78
NF8978_low_78
[»] chr3 (1 HSPs)
chr3 (1-192)||(50273366-50273557)
[»] chr1 (2 HSPs)
chr1 (1-192)||(1459380-1459571)
chr1 (1-192)||(1499172-1499363)
[»] chr8 (2 HSPs)
chr8 (1-192)||(26787250-26787441)
chr8 (1-60)||(975615-975674)
[»] chr2 (5 HSPs)
chr2 (1-186)||(15866293-15866478)
chr2 (1-66)||(21983202-21983267)
chr2 (1-66)||(45200171-45200236)
chr2 (122-178)||(21982999-21983055)
chr2 (122-190)||(45199944-45200012)
[»] chr4 (3 HSPs)
chr4 (2-190)||(53077760-53077948)
chr4 (128-186)||(44529948-44530006)
chr4 (2-66)||(48439770-48439834)
[»] chr6 (2 HSPs)
chr6 (137-187)||(3152067-3152117)
chr6 (1-66)||(3151615-3151680)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 50273366 - 50273557
Alignment:
Q  1 tatgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggctaatggcagtggaagacctcctgattggcaggattttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50273366 tatgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggctaatggcagtggaagacctcctgattggcaggattttgtt 50273465  T
Q  101 ggtatcatttctcttttggttattaactcaactatcagtttcattgaagagaataatgctggtaatgctgctgctgctctcatggctggttt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50273466 ggtatcatttctcttttggttattaactcaactatcagtttcattgaagagaataatgctggtaatgctgctgctgctctcatggctggttt 50273557  T

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Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 1459380 - 1459571
Alignment:
Q  1 tatgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggctaatggcagtggaagacctcctgattggcaggattttgtt 100  Q
    ||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||||| || |||||     
T  1459380 tatgtggaaccctttgtcatgggttatggaagctgctgctattatggccattgctttggctaatggtgatggaaggcctcctgattggcaagactttgtc 1459479  T
Q  101 ggtatcatttctcttttggttattaactcaactatcagtttcattgaagagaataatgctggtaatgctgctgctgctctcatggctggttt 192  Q
    || |||||| |||| ||||| || ||||| || ||||||||||||||||| || ||||| || || ||||| ||||||||||||||||||||    
T  1459480 ggaatcattgctctcttggtcatcaactccaccatcagtttcattgaagaaaacaatgccggcaacgctgccgctgctctcatggctggttt 1459571  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 1499363 - 1499172
Alignment:
Q  1 tatgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggctaatggcagtggaagacctcctgattggcaggattttgtt 100  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||| || |||||     
T  1499363 tatgtggaatcctttatcatgggttatggaagctgctgctatcatggccattgctttggctaatggaagtggaaggccccctgattggcaagactttgtc 1499264  T
Q  101 ggtatcatttctcttttggttattaactcaactatcagtttcattgaagagaataatgctggtaatgctgctgctgctctcatggctggttt 192  Q
    || |||||| || | || || || || || || ||||||||||||||||| || ||||| || ||||| || ||||||||||||||||||||    
T  1499263 ggaatcattgctttgttagtcatcaattccacaatcagtttcattgaagaaaacaatgccggcaatgccgccgctgctctcatggctggttt 1499172  T

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Target: chr8 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 26787250 - 26787441
Alignment:
Q  1 tatgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggctaatggcagtggaagacctcctgattggcaggattttgtt 100  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| || ||||||||||| || ||||||    
T  26787250 tatgtggaaccctttatcatgggttatggaagctgctgctattatggccattgctttggctaatggtgatggaaggccccctgattggcaagactttgtt 26787349  T
Q  101 ggtatcatttctcttttggttattaactcaactatcagtttcattgaagagaataatgctggtaatgctgctgctgctctcatggctggttt 192  Q
    || |||||| |||||||| | || ||  | || ||||||||||||||||| || ||||| || || ||||| || |||||||||||||||||    
T  26787350 ggaatcattgctcttttgatcatcaatgccaccatcagtttcattgaagaaaacaatgccggcaacgctgccgccgctctcatggctggttt 26787441  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 975674 - 975615
Alignment:
Q  1 tatgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggc 60  Q
    |||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||||    
T  975674 tatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattgctatggc 975615  T

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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 15866293 - 15866478
Alignment:
Q  1 tatgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggctaatggcagtggaagacctcctgattggcaggattttgtt 100  Q
    |||||||||||||||||||||||| ||||||||||| ||| | ||||| |||||| | || || ||    |||   ||||| |||||||| ||||||||     
T  15866293 tatgtggaatccattatcatgggtgatggaagctgcagctttaatggcaattgctcttgcgaacggagaaggacagcctccagattggcaagattttgtg 15866392  T
Q  101 ggtatcatttctcttttggttattaactcaactatcagtttcattgaagagaataatgctggtaatgctgctgctgctctcatggc 186  Q
    || || ||||   | |||||||| ||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||    
T  15866393 ggaattatttgcttgttggttatcaactctactatcagtttcattgaagaaaataatgccggtaacgctgctgctgctcttatggc 15866478  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 21983267 - 21983202
Alignment:
Q  1 tatgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggctaatgg 66  Q
    |||||||||||||||||||||||| ||||| || ||||| || ||||||||||  ||||| |||||    
T  21983267 tatgtggaatccattatcatgggtcatggaggcagctgcaatcatggccattgtattggccaatgg 21983202  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 45200236 - 45200171
Alignment:
Q  1 tatgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggctaatgg 66  Q
    ||||||||||||  | |||||||| ||||||||||||||||| ||||| ||||| ||||| |||||    
T  45200236 tatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatgg 45200171  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 21983055 - 21982999
Alignment:
Q  122 attaactcaactatcagtttcattgaagagaataatgctggtaatgctgctgctgct 178  Q
    ||||||||||| || ||||||||||| || || |||||||| |||||||| ||||||    
T  21983055 attaactcaacgattagtttcattgaggaaaacaatgctggaaatgctgcagctgct 21982999  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 45200012 - 45199944
Alignment:
Q  122 attaactcaactatcagtttcattgaagagaataatgctggtaatgctgctgctgctctcatggctggt 190  Q
    ||||||||||| || ||||| || ||||| || |||||||| ||||||||||| || || |||||||||    
T  45200012 attaactcaaccattagttttatagaagaaaacaatgctggaaatgctgctgcagcacttatggctggt 45199944  T

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Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 53077948 - 53077760
Alignment:
Q  2 atgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggctaatggcagtggaagacctcctgattggcaggattttgttg 101  Q
    ||||||||||| || |||||||| ||||||||||| ||| | ||||| |||| | | || ||||| | |||||  || || |||||||| |||||||| |    
T  53077948 atgtggaatcctttgtcatgggtcatggaagctgcggctttgatggcaattggtcttgcaaatggtaatggaaagcccccggattggcaagattttgtag 53077849  T
Q  102 gtatcatttctcttttggttattaactcaactatcagtttcattgaagagaataatgctggtaatgctgctgctgctctcatggctggt 190  Q
    |||| ||||   | ||||| || ||||| || ||||||||||||||||| |||||||| ||||| |||||||| ||||| |||||||||    
T  53077848 gtattatttgcttgttggtgatcaactccaccatcagtttcattgaagaaaataatgccggtaacgctgctgcagctcttatggctggt 53077760  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 44529948 - 44530006
Alignment:
Q  128 tcaactatcagtttcattgaagagaataatgctggtaatgctgctgctgctctcatggc 186  Q
    ||||| || ||||||||||||||||| ||||| |||||||| ||||| |||||||||||    
T  44529948 tcaaccattagtttcattgaagagaacaatgccggtaatgcagctgcagctctcatggc 44530006  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 48439834 - 48439770
Alignment:
Q  2 atgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggctaatgg 66  Q
    |||||||||||| |||||||||||||||| | ||||||  ||||||||||||  ||||| |||||    
T  48439834 atgtggaatccactatcatgggttatggaggttgctgcccttatggccattggattggcaaatgg 48439770  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 3152067 - 3152117
Alignment:
Q  137 agtttcattgaagagaataatgctggtaatgctgctgctgctctcatggct 187  Q
    |||||||| || |||||||||||||||||||||||||| ||||||||||||    
T  3152067 agtttcatcgaggagaataatgctggtaatgctgctgcagctctcatggct 3152117  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3151615 - 3151680
Alignment:
Q  1 tatgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggctaatgg 66  Q
    ||||||||||||  | |||||||| ||||||||||| || || ||||| ||||||||||| |||||    
T  3151615 tatgtggaatcctctttcatgggtgatggaagctgcagcaatcatggctattgctttggccaatgg 3151680  T

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