View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8979_high_1 (Length: 750)
Name: NF8979_high_1
Description: NF8979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8979_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 671; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 24 - 734
Target Start/End: Complemental strand, 46643466 - 46642756
Alignment:
| Q |
24 |
aggaggaggtggacaagaaggtggtgttggcggtagagttacaaaagaacaaccaacaccagtacaatgaacaggatgttcataaaaagcatcacaccca |
123 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46643466 |
aggaggaggtggacaagaaggtggtggtggcggtagagttacaaaagaacaaccaacaccagtacaatgaacaggatgttcataaaaagcatcacaccca |
46643367 |
T |
|
| Q |
124 |
tgactcgatctttggaaatgcatatgaggaatacaattctttgtatcatccttatcatccaacttaacacaaatctctgattcaccactaaagtaattat |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
46643366 |
tgactcgatctttggaaatgcatatgaggaatacaattctttgtatcatccttatcatccaacttaacacaaatctctgattcaccactcaggtaattat |
46643267 |
T |
|
| Q |
224 |
acgaatacgtcaaattctccaaccttggcaatctacatatactctcaggaataacaccagaaaatttattatgtgccacattcaactgctccaaactttt |
323 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46643266 |
acgaatacgttaaattcttcaaccttggcaatctacatatactctcaggaataacaccagaaaatttattatgtgccacattcaactgctccaaactttt |
46643167 |
T |
|
| Q |
324 |
cattccactgatactttcaggcaattcaccaacaaactcattaaaactaacatcaaacactgtcactttatccaattttcctatatcattaggtaaacag |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46643166 |
cattccactgatactttcaggcaattcaccaacaaactcattaaaactaacatcaaacactgtcactttatccaattttcctatatcattaggtaaacag |
46643067 |
T |
|
| Q |
424 |
cctttcattttgctgttcgtcataattatctcattgattgtatccttcatattcgctacactcgatggaatacaaccttgtatatcattgttcgcgaaca |
523 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46643066 |
cctttcattctgctgttcgtcataattatctcgttgattgtatctttcatattcgctacactcgatggaatacaaccttgtatatcattgttcgcgaaca |
46642967 |
T |
|
| Q |
524 |
caacaacagaagctggcatctttccgaaattttctggtaaagaaaatttgaatttgttgttgttgatgaaaagtgcatcaagtttgagatcaaagaggcc |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642966 |
caacaacagaagctggcatctttccgaaattttctggtaaagaaaatttgaatttgttgttgttgatgaaaagtgcatcaagtttgagatcaaagaggcc |
46642867 |
T |
|
| Q |
624 |
tttaggaacatttccttgaaaattgttgtatcttatgtctaagtattttaatgaaggaatgcaaagaacaacctccggaaatgttcctgagaattggttg |
723 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46642866 |
tttaggaacatttccttgaaaattgttgtatcttatgtccaagtattttaatgaaggaatgcaaagaacaacctccgggaatgttcctgagaattggttg |
46642767 |
T |
|
| Q |
724 |
ttactgatgtc |
734 |
Q |
| |
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||||||||||| |
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| T |
46642766 |
ttactgatgtc |
46642756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 703 - 734
Target Start/End: Complemental strand, 46640495 - 46640464
Alignment:
| Q |
703 |
aatgttcctgagaattggttgttactgatgtc |
734 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
46640495 |
aatgttcctgagaattggttgttactgatgtc |
46640464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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