View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8979_high_6 (Length: 324)
Name: NF8979_high_6
Description: NF8979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8979_high_6 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 2326092 - 2326395
Alignment:
| Q |
8 |
catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaat |
107 |
Q |
| |
|
||||||||||| | | |||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326092 |
catcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaat |
2326191 |
T |
|
| Q |
108 |
atcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2326192 |
atcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttc |
2326291 |
T |
|
| Q |
208 |
ccaatcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgct |
307 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||||||| |
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|
| T |
2326292 |
ccagtcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatggtgtaccctccgtcgtaacctcgcctctgagatgct |
2326391 |
T |
|
| Q |
308 |
tcat |
311 |
Q |
| |
|
|||| |
|
|
| T |
2326392 |
tcat |
2326395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 2329808 - 2330110
Alignment:
| Q |
9 |
atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaata |
108 |
Q |
| |
|
|||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2329808 |
atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata |
2329907 |
T |
|
| Q |
109 |
tcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcc |
208 |
Q |
| |
|
|||| || |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || || ||||||| |||||||||||||||||||| |
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|
| T |
2329908 |
tcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtcttctctgatcgtcctaaagcacttcc |
2330007 |
T |
|
| Q |
209 |
caatcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgctt |
308 |
Q |
| |
|
|| | |||||||||| || |||||||||||||| |||||| ||||||||||||| |||||||||||||| ||| || ||||||||||||||||||||||| |
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|
| T |
2330008 |
cactaacaaactcatgtccagcaaccagcacaatatcagctccgctttttatggaccaacatggcgtactctccgtcgtaacctcgcctccgagatgctt |
2330107 |
T |
|
| Q |
309 |
cat |
311 |
Q |
| |
|
||| |
|
|
| T |
2330108 |
cat |
2330110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 2292918 - 2293221
Alignment:
| Q |
8 |
catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |
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|
| T |
2292918 |
catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccat |
2293017 |
T |
|
| Q |
108 |
atcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttc |
207 |
Q |
| |
|
||||| || |||||||||||| ||| ||||| | ||||||||||||| | |||||||||||| ||||| ||||||| ||||| |||| ||| |||| |
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|
| T |
2293018 |
atcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatccatcttctctgatcgccctacagctcttc |
2293117 |
T |
|
| Q |
208 |
ccaatcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgct |
307 |
Q |
| |
|
| | | |||| | | || |||||||| |||||||||| | |||||| |||||||||||||||||||||||| || ||||||| || ||||||||||| |
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|
| T |
2293118 |
ctacttccaaaatgttgtccagcaaccaacacaacatcaacaccgcttattatggcccaacatggcgtacccttcgtcgtaaccttgcttccgagatgct |
2293217 |
T |
|
| Q |
308 |
tcat |
311 |
Q |
| |
|
|||| |
|
|
| T |
2293218 |
tcat |
2293221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 2320238 - 2320541
Alignment:
| Q |
8 |
catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |
|
|
| T |
2320238 |
catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccat |
2320337 |
T |
|
| Q |
108 |
atcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttc |
207 |
Q |
| |
|
||||| || |||||||||||| |||| ||||| ||||||||| ||||| | |||||||||||| ||| | ||||||| ||||| || ||| |||| |
|
|
| T |
2320338 |
atcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctcggatcgccccgtagctcttc |
2320437 |
T |
|
| Q |
208 |
ccaatcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgct |
307 |
Q |
| |
|
| | | || | | | || |||||||| |||||||||||| |||||||||||||||||||||||||||||||| || ||||||| || ||||||||||| |
|
|
| T |
2320438 |
ctacttccataatgttgtccagcaaccaacacaacatcagctccgctttttatggcccaacatggcgtaccctccgtcgtaaccttgcttccgagatgct |
2320537 |
T |
|
| Q |
308 |
tcat |
311 |
Q |
| |
|
|||| |
|
|
| T |
2320538 |
tcat |
2320541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 2309249 - 2309552
Alignment:
| Q |
8 |
catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |
|
|
| T |
2309249 |
catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattgtccat |
2309348 |
T |
|
| Q |
108 |
atcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttc |
207 |
Q |
| |
|
||||| || ||||||||||| |||| ||||| ||||||||| ||||| | |||||||||||| ||| | | |||| ||||| |||| ||| |||| |
|
|
| T |
2309349 |
atcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccataatctctgatcgccctacagctcttc |
2309448 |
T |
|
| Q |
208 |
ccaatcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgct |
307 |
Q |
| |
|
| | | |||| | | || |||||||| |||||||||| | |||||||||||||||||||||||||||||||| || ||||||| || | ||||||||| |
|
|
| T |
2309449 |
ctacttccaaaatgttgtccagcaaccaacacaacatcaacaccgctttttatggcccaacatggcgtaccctccgtcgtaaccttgctttcgagatgct |
2309548 |
T |
|
| Q |
308 |
tcat |
311 |
Q |
| |
|
|||| |
|
|
| T |
2309549 |
tcat |
2309552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 2302537 - 2302840
Alignment:
| Q |
8 |
catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaat |
107 |
Q |
| |
|
|||| |||||||| | || ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
2302537 |
catcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactctccac |
2302636 |
T |
|
| Q |
108 |
atcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttc |
207 |
Q |
| |
|
||||| || |||||||||||| |||| |||| ||||||||||||||| | |||||||||||| ||| ||| ||| ||||| |||||||| ||| |
|
|
| T |
2302637 |
atcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgttcaaaactcagacatctactctgatcgccctaaagcttttc |
2302736 |
T |
|
| Q |
208 |
ccaatcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgct |
307 |
Q |
| |
|
| | | |||| | | || |||||||| |||||||||||| ||| |||||||||||||||||||||||||||| || ||||||| || |||||||| || |
|
|
| T |
2302737 |
ctacttccaaaatgttgtccagcaaccaacacaacatcagctccggtttttatggcccaacatggcgtaccctccgtcgtaaccttgcttccgagatact |
2302836 |
T |
|
| Q |
308 |
tcat |
311 |
Q |
| |
|
|||| |
|
|
| T |
2302837 |
tcat |
2302840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 45 - 311
Target Start/End: Original strand, 2350144 - 2350410
Alignment:
| Q |
45 |
tcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtg |
144 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||||| ||||| ||||||||||||||| ||| || ||| | | | |||||||||||| ||||||||||| | |
|
|
| T |
2350144 |
tcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccata |
2350243 |
T |
|
| Q |
145 |
ctctggcccaccacgctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcccaatcacaaactcatatctagcaaccagcacaacat |
244 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| | ||||||| ||||| |||| ||| ||||||| |||| |||| || |||||||| |||||||| |
|
|
| T |
2350244 |
ctctcgcccaccacgctctcgttcaaaactcagccatcttctctgatcgccctagagctcttcccaccgccaaaatcatctccagcaaccaacacaacat |
2350343 |
T |
|
| Q |
245 |
cagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcat |
311 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| ||||| || | ||||| || || |||||||||||| |
|
|
| T |
2350344 |
cagctccgctttttatggtgcaacatggcgtgccctccgtcgaaaccttgcttctgagatgcttcat |
2350410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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