View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8979_low_11 (Length: 337)
Name: NF8979_low_11
Description: NF8979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8979_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 3951746 - 3951947
Alignment:
| Q |
11 |
cacagaacacaaggaagcattatttagcataggaaattccactatacctacatggtcttttgatacagaatctatcagtagaataaaatcacgttatgga |
110 |
Q |
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| T |
3951746 |
cacacaacacaaggaagcattatttagcataggaaattccactacacctacatggtcttttgatacagaatctatcagtagaataaaatcacgttatgga |
3951845 |
T |
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| Q |
111 |
ttggactgttgctcaaggaagttttaactatccacaatcctaaggtgtctgagagaatgttgggtaggtactattctattccactgttaatattataata |
210 |
Q |
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| T |
3951846 |
ttggactgttgctcaagaaagttttaactatccacaatcctaaggtgtctgagagaatgttgggtaggtactattctattccaccgttaatattataata |
3951945 |
T |
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| Q |
211 |
ta |
212 |
Q |
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|| |
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| T |
3951946 |
ta |
3951947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 204 - 321
Target Start/End: Original strand, 3952333 - 3952452
Alignment:
| Q |
204 |
tataatataatattggcatgtcctatactactatattttaatcataatatactcttcagtttac--nnnnnnnntatatatatacacttttccctcttaa |
301 |
Q |
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| T |
3952333 |
tataatataatattggcatgtcctatactactatattttaatcataatatactcttcagtttacaaaaaaaatatatatatatatacttttccctcttaa |
3952432 |
T |
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| Q |
302 |
tcaaattgtttggatcttct |
321 |
Q |
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|||| ||||||||||||||| |
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| T |
3952433 |
tcaatttgtttggatcttct |
3952452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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